millironx/SequenceVariation.jl
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Mark is_valid(::Variation) as private function

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This commit is contained in:
Thomas A. Christensen II 2022-12-31 14:46:23 -06:00
parent 386acba8ab
commit 1f2b116518
2 changed files with 3 additions and 3 deletions
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2
src/Variant.jl
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@ -40,7 +40,7 @@ function _is_valid(v::Variant)
op = edit.x
# Sanity check: for this to be a valid variant, it must be comprised of valid
# variations
is_valid(Variation(v.ref, edit)) || return false
_is_valid(Variation(v.ref, edit)) || return false
# For substitutions we simply do not allow another modification of the same base
if op isa Substitution

4
src/Variation.jl
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@ -11,7 +11,7 @@ end
function Variation{S,T}(ref::S, e::Edit{S,T}) where {S<:BioSequence,T<:BioSymbol}
v = Variation{S,T}(ref, e, Unsafe())
return is_valid(v) ? v : throw(ArgumentError("Invalid variant"))
return _is_valid(v) ? v : throw(ArgumentError("Invalid variant"))
end
Variation(ref::S, edit::Edit{S,T}) where {S,T} = Variation{S,T}(ref, edit)
@ -36,7 +36,7 @@ BioGenerics.rightposition(v::Variation) = rightposition(_edit(v))
Base.:(==)(x::Variation, y::Variation) = x.ref == y.ref && x.edit == y.edit
Base.hash(x::Variation, h::UInt) = hash(Variation, hash((x.ref, x.edit), h))
function is_valid(v::Variation)
function _is_valid(v::Variation)
isempty(v.ref) && return false
op = v.edit.x
pos = v.edit.pos