From 3b33c85d00db3437998fdc93075b37399204ff42 Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Tue, 22 Nov 2022 10:23:34 -0600
Subject: [PATCH] Add type parameterization to variations getter

I have encountered some cases where having a non-parameterized vector can
crash a downstream process. I don't yet know how to make a MWE of that, but
adding type parameters fixes my problem, and doesn't break any tests here.
---
 src/SequenceVariation.jl | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/SequenceVariation.jl b/src/SequenceVariation.jl
index c273a02..522a55f 100644
--- a/src/SequenceVariation.jl
+++ b/src/SequenceVariation.jl
@@ -463,10 +463,10 @@ function translate(var::Variation{S, T}, aln::PairwiseAlignment{S, S}) where {S,
     end
 end
 
-function variations(v::Variant)
-    vs = Vector{Variation}(undef, length(edits(v)))
+function variations(v::Variant{S,T}) where {S,T}
+    vs = Vector{Variation{S,T}}(undef, length(edits(v)))
     for (i, e) in enumerate(edits(v))
-        vs[i] = Variation(reference(v), e)
+        vs[i] = Variation{S,T}(reference(v), e)
     end
     return vs
 end