millironx/SequenceVariation.jl
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feat: Add SubstitutionEdit type

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This commit is contained in:
Thomas A. Christensen II 2024-10-01 10:54:43 -05:00
parent 9d882fb1d8
commit 3eab426398
Signed by: millironx
GPG key ID: B7044A3432851F64
1 changed files with 22 additions and 0 deletions
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src/Edit.jl
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@ -62,6 +62,28 @@ Base.hash(x::InsertionEdit, h::UInt) = hash(InsertionEdit, hash((x.position, x.s
BioGenerics.leftposition(i::InsertionEdit) = i.position BioGenerics.leftposition(i::InsertionEdit) = i.position
BioGenerics.rightposition(i::InsertionEdit) = leftposition(i) + 1 BioGenerics.rightposition(i::InsertionEdit) = leftposition(i) + 1
struct SubstitutionEdit{S<:BioSequence,T<:BioSymbol} <: Edit{S,T}
position::UInt
base::T
function SubstitutionEdit{T}(position::UInt, base::T) where {T<:BioSymbol}
iszero(position) &&
function SubstitutionEdit{S,T}(
position::UInt, base::T
) where {S<:BioSequence,T<:BioSymbol}
return new(position, base)
end
end
Base.length(s::SubstitutionEdit) = 1
function Base.:(==)(x::SubstitutionEdit, y::SubstitutionEdit)
return x.position == y.position && x.base == y.base
end
function Base.hash(x::SubstitutionEdit, h::UInt)
return hash(SubstitutionEdit, hash((x.position, x.base), h))
end
BioGenerics.leftposition(s::SubstitutionEdit) = s.position
BioGenerics.rightposition(s::SubstitutionEdit) = leftposition(s)
function Base.parse(::Type{T}, s::AbstractString) where {T<:Edit{Se,Sy}} where {Se,Sy} function Base.parse(::Type{T}, s::AbstractString) where {T<:Edit{Se,Sy}} where {Se,Sy}
return parse(T, String(s)) return parse(T, String(s))
end end