From 6bc1528d18ac2bbda9f48c2ebffe2cb51201e9a0 Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Tue, 14 Jun 2022 16:24:55 -0500
Subject: [PATCH] Add tests for Variation parsing

---
 test/runtests.jl | 15 ++++++++++++++-
 1 file changed, 14 insertions(+), 1 deletion(-)

diff --git a/test/runtests.jl b/test/runtests.jl
index 78e4d0b..280f18a 100644
--- a/test/runtests.jl
+++ b/test/runtests.jl
@@ -23,9 +23,10 @@ TODO now:
 * Add tests
 """
 
-using BioSequences
 using BioAlignments
+using BioSequences
 using SequenceVariation
+using Test
 
 const DNA_MODEL = BioAlignments.AffineGapScoreModel(EDNAFULL, gap_open=-25, gap_extend=-2)
 
@@ -44,3 +45,15 @@ var = Variant(align(seq1, seq2))
     aln02 = PairwiseAlignment(read02, refseq)
     @test Variant(aln01).edits == Variant(aln02).edits
 end
+
+@testset "VariationParsing" begin
+    refseq = dna"ACAACTTTATCT"
+
+    sub = Variation(refseq, "A4T")
+    del = Variation(refseq, "Δ4-5")
+    ins = Variation(refseq, "4TT")
+
+    @test mutation(sub) isa Substitution
+    @test mutation(del) isa Deletion
+    @test mutation(ins) isa Insertion
+end