diff --git a/.github/ISSUE_TEMPLATE/bug.yml b/.github/ISSUE_TEMPLATE/bug.yml
new file mode 100644
index 0000000..8ff3440
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/bug.yml
@@ -0,0 +1,59 @@
+name: Bug
+description: Bug report
+
+body:
+
+  - type: markdown
+    attributes:
+      value: "> _This template is rather extensive. Fill out all that you can, if are a new contributor or you're unsure about any section, leave it unchanged and a reviewer will help you_ :smile:."
+
+  - type: textarea
+    validations:
+      required: true
+    attributes:
+      label: Expected behavior
+      description: Tell us what you expect to happen
+
+  - type: textarea
+    validations:
+      required: true
+    attributes:
+      label: Current behavior
+      description: Tell us what happens instead of the expected behavior
+
+  - type: textarea
+    attributes:
+      label: Possible solution
+      description: Suggest a fix/reason for the bug (optional)
+
+  - type: textarea
+    validations:
+      required: true
+    attributes:
+      label: Steps to reproduce
+      description: You may include copy-pasteable snippets or a list of steps to reproduce the bug
+
+  - type: textarea
+    attributes:
+      label: Context
+      description: How has this issue affected you? What are you trying to accomplish? Providing context helps us come up with a solution that is most useful in the real world.
+
+  - type: input
+    attributes:
+      label: Package version used
+
+  - type: input
+    attributes:
+      label: Julia version used
+
+  - type: input
+    attributes:
+      label: Operating system and version
+
+  - type: input
+    attributes:
+      label: Link to your project
+
+  - type: textarea
+    attributes:
+      label: Please list installed packages here
diff --git a/.github/ISSUE_TEMPLATE/change.yml b/.github/ISSUE_TEMPLATE/change.yml
new file mode 100644
index 0000000..ce6cdc5
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/change.yml
@@ -0,0 +1,38 @@
+name: Change
+description: Change/improvement suggestion
+
+body:
+
+  - type: markdown
+    attributes:
+      value: "> _This template is rather extensive. Fill out all that you can, if are a new contributor or you're unsure about any section, leave it unchanged and a reviewer will help you_ :smile:."
+
+  - type: textarea
+    validations:
+      required: true
+    attributes:
+      label: Expected behavior
+      description: Tell us how it should work
+
+  - type: textarea
+    validations:
+      required: true
+    attributes:
+      label: Current behavior
+      description: Explain the difference from current behavior
+
+  - type: textarea
+    validations:
+      required: true
+    attributes:
+      label: Possible implementation
+      description: Suggest ideas how to implement the addition or change
+
+  - type: textarea
+    attributes:
+      label: Context
+      description: How has this issue affected you? What are you trying to accomplish? Providing context helps us come up with a solution that is most useful in the real world.
+
+  - type: input
+    attributes:
+      label: Link to your project
diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md
new file mode 100644
index 0000000..4f23e7b
--- /dev/null
+++ b/.github/PULL_REQUEST_TEMPLATE.md
@@ -0,0 +1,47 @@
+# A clear and descriptive title (No issue numbers please)
+
+> _This template is rather extensive. Fill out all that you can, if are a new contributor or you're unsure about any section, leave it unchanged and a reviewer will help you_ :smile:. _This template is simply a tool to help everyone remember the BioJulia guidelines, if you feel anything in this template is not relevant, simply delete it._
+
+## Types of changes
+
+This PR implements the following changes:
+_(Please tick any or all of the following that are applicable)_
+
+- [ ] :sparkles: New feature (A non-breaking change which adds functionality).
+- [ ] :bug: Bug fix (A non-breaking change, which fixes an issue).
+- [ ] :boom: Breaking change (fix or feature that would cause existing functionality to change).
+
+## :clipboard: Additional detail
+
+- If you have implemented new features or behaviour
+  - **Provide a description of the addition** in as many details as possible.
+
+  - **Provide justification of the addition**.
+
+  - **Provide a runnable example of use of your addition**. This lets reviewers
+    and others try out the feature before it is merged or makes it's way to release.
+
+- If you have changed current behaviour...
+  - **Describe the behaviour prior to you changes**
+
+  - **Describe the behaviour after your changes** and justify why you have made the changes,
+    Please describe any breakages you anticipate as a result of these changes.
+
+  - **Does your change alter APIs or existing exposed methods/types?**
+    If so, this may cause dependency issues and breakages, so the maintainer
+    will need to consider this when versioning the next release.
+
+  - If you are implementing changes that are intended to increase performance, you
+    should provide the results of a simple performance benchmark exercise
+    demonstrating the improvement. Especially if the changes make code less legible.
+
+## :ballot_box_with_check: Checklist
+
+- [ ] :art: The changes implemented is consistent with the [julia style guide](https://docs.julialang.org/en/v1/manual/style-guide/).
+- [ ] :blue_book: I have updated and added relevant docstrings, in a manner consistent with the [documentation styleguide](https://docs.julialang.org/en/v1/manual/documentation/).
+- [ ] :blue_book: I have added or updated relevant user and developer manuals/documentation in `docs/src/`.
+- [ ] :ok: There are unit tests that cover the code changes I have made.
+- [ ] :ok: The unit tests cover my code changes AND they pass.
+- [ ] :pencil: I have added an entry to the `[UNRELEASED]` section of the manually curated `CHANGELOG.md` file for this repository.
+- [ ] :ok: All changes should be compatible with the latest stable version of Julia.
+- [ ] :thought_balloon: I have commented liberally for any complex pieces of internal code.
diff --git a/.github/workflows/CompatHelper.yml b/.github/workflows/CompatHelper.yml
new file mode 100644
index 0000000..cba9134
--- /dev/null
+++ b/.github/workflows/CompatHelper.yml
@@ -0,0 +1,16 @@
+name: CompatHelper
+on:
+  schedule:
+    - cron: 0 0 * * *
+  workflow_dispatch:
+jobs:
+  CompatHelper:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
+        run: julia -e 'using CompatHelper; CompatHelper.main()'
diff --git a/.github/workflows/Documentation.yml b/.github/workflows/Documentation.yml
new file mode 100644
index 0000000..c88c74a
--- /dev/null
+++ b/.github/workflows/Documentation.yml
@@ -0,0 +1,26 @@
+name: Documentation
+
+on:
+  push:
+    branches:
+      - master
+      - develop
+      - release/.*
+    tags: ['*']
+  pull_request:
+
+jobs:
+  docs:
+    name: Documentation
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: '1'
+      - run: julia --color=yes --project=docs -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+      - run: julia --color=yes --project=docs docs/make.jl
+        env:
+          JULIA_PKG_SERVER: ""
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
diff --git a/.github/workflows/TagBot.yml b/.github/workflows/TagBot.yml
new file mode 100644
index 0000000..f49313b
--- /dev/null
+++ b/.github/workflows/TagBot.yml
@@ -0,0 +1,15 @@
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}
diff --git a/.github/workflows/UnitTests.yml b/.github/workflows/UnitTests.yml
new file mode 100644
index 0000000..2803b3f
--- /dev/null
+++ b/.github/workflows/UnitTests.yml
@@ -0,0 +1,61 @@
+name: Unit Tests
+
+on:
+  - push
+  - pull_request
+
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        julia-version:
+          - '1.6'
+          - '1'
+          - 'nightly'
+        julia-arch:
+          - x64
+          - x86
+        os:
+          - ubuntu-latest
+          - windows-latest
+          - macOS-latest
+        exclude:
+          - os: macOS-latest
+            julia-arch: x86
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v3
+      - name: Setup Julia
+        uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.julia-version }}
+          arch: ${{ matrix.julia-arch }}
+      - name: Cache artifacts
+        uses: actions/cache@v3
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - name: Build package
+        uses: julia-actions/julia-buildpkg@v1
+      - name: Run tests
+        uses: julia-actions/julia-runtest@v1
+      - name: Create CodeCov
+        uses: julia-actions/julia-processcoverage@v1
+      - name: Upload CodeCov
+        uses: codecov/codecov-action@v1
+        with:
+          file: lcov.info
+          flags: unittests
+          name: codecov-umbrella
+          fail_ci_if_error: false
+          token: ${{ secrets.CODECOV_TOKEN }}
diff --git a/.github/workflows/register.yml b/.github/workflows/register.yml
new file mode 100644
index 0000000..6e71f2f
--- /dev/null
+++ b/.github/workflows/register.yml
@@ -0,0 +1,14 @@
+name: Register Package
+on:
+  workflow_dispatch:
+    inputs:
+      version:
+        description: Version to register or component to bump
+        required: true
+jobs:
+  register:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: julia-actions/RegisterAction@latest
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..29126e4
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,24 @@
+# Files generated by invoking Julia with --code-coverage
+*.jl.cov
+*.jl.*.cov
+
+# Files generated by invoking Julia with --track-allocation
+*.jl.mem
+
+# System-specific files and directories generated by the BinaryProvider and BinDeps packages
+# They contain absolute paths specific to the host computer, and so should not be committed
+deps/deps.jl
+deps/build.log
+deps/downloads/
+deps/usr/
+deps/src/
+
+# Build artifacts for creating documentation generated by the Documenter package
+docs/build/
+docs/site/
+
+# File generated by Pkg, the package manager, based on a corresponding Project.toml
+# It records a fixed state of all packages used by the project. As such, it should not be
+# committed for packages, but should be committed for applications that require a static
+# environment.
+Manifest.toml
diff --git a/CHANGELOG.md b/CHANGELOG.md
new file mode 100644
index 0000000..61da4e8
--- /dev/null
+++ b/CHANGELOG.md
@@ -0,0 +1,18 @@
+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0)
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [Unreleased]
+
+### Added
+
+- Mutation types (`Substitution`, `Deletion`, `Insertion`)
+- `Variant` type to store groups of mutations together
+- `Variation` type to store and compare individual mutations
+- `reconstruct!` function to build mutated sequences from `Variant`s
+- `Variant` constructor to automatically detect mutations from a `BioAlignments.PairwiseAlignment`
+
+[unreleased]: https://github.com/BioJulia/SequenceVariation.jl
diff --git a/LICENSE b/LICENSE
new file mode 100644
index 0000000..346dcf2
--- /dev/null
+++ b/LICENSE
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2022 Jakob Nybo Nissen, Thomas A. Christensen II and other contributors.
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff --git a/Manifest.toml b/Manifest.toml
deleted file mode 100644
index 269e2b2..0000000
--- a/Manifest.toml
+++ /dev/null
@@ -1,241 +0,0 @@
-# This file is machine-generated - editing it directly is not advised
-
-[[ArgTools]]
-uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
-
-[[Artifacts]]
-uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
-
-[[Automa]]
-deps = ["DataStructures", "Printf", "Random", "Test", "TranscodingStreams"]
-git-tree-sha1 = "c81526bf5f6fb4616b4e22a3cd62ac20e255fd3c"
-uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"
-version = "0.8.0"
-
-[[Base64]]
-uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
-
-[[BioAlignments]]
-deps = ["BioGenerics", "BioSequences", "BioSymbols", "IntervalTrees", "LinearAlgebra"]
-git-tree-sha1 = "f610a3a965f187890edb0b1fdef4f30d77852edd"
-uuid = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e"
-version = "2.0.0"
-
-[[BioGenerics]]
-deps = ["TranscodingStreams"]
-git-tree-sha1 = "6d3f3b474b3df2e83dc67ad12ec63aee4eb5241b"
-uuid = "47718e42-2ac5-11e9-14af-e5595289c2ea"
-version = "0.1.1"
-
-[[BioSequences]]
-deps = ["BioGenerics", "BioSymbols", "Combinatorics", "IndexableBitVectors", "Printf", "Random", "StableRNGs", "Twiddle"]
-git-tree-sha1 = "093ccb9211bdc71924abf8e74a0790af11da35a7"
-uuid = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
-version = "2.0.5"
-
-[[BioSymbols]]
-deps = ["Automa"]
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-uuid = "3c28c6f8-a34d-59c4-9654-267d177fcfa9"
-version = "4.0.4"
-
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-uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"
-version = "1.0.2"
-
-[[Compat]]
-deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "8cd7b7d1c7f6fcbe7e8743a58adf57788ec7f787"
-uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.18.0"
-
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-uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-
-[[DataStructures]]
-deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
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-version = "0.18.6"
-
-[[Dates]]
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-
-[[DelimitedFiles]]
-deps = ["Mmap"]
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-
-[[Distributed]]
-deps = ["Random", "Serialization", "Sockets"]
-uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
-
-[[Downloads]]
-deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
-uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
-
-[[FileWatching]]
-uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
-
-[[IndexableBitVectors]]
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-[[IntervalTrees]]
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-
-[[LibCURL]]
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-
-[[LibCURL_jll]]
-deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
-uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-
-[[LibGit2]]
-deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
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-
-[[LibSSH2_jll]]
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-
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-
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-
-[[Serialization]]
-uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
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-[[Test]]
-deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
-uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-
-[[TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c"
-uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.5"
-
-[[Twiddle]]
-git-tree-sha1 = "29509c4862bfb5da9e76eb6937125ab93986270a"
-uuid = "7200193e-83a8-5a55-b20d-5d36d44a0795"
-version = "1.1.2"
-
-[[UUIDs]]
-deps = ["Random", "SHA"]
-uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
-
-[[Unicode]]
-uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
-
-[[Zlib_jll]]
-deps = ["Libdl"]
-uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
-
-[[libblastrampoline_jll]]
-deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
-uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
-
-[[nghttp2_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-
-[[p7zip_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
diff --git a/Project.toml b/Project.toml
index 49b3659..16b268b 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,6 +1,6 @@
 name = "SequenceVariation"
 uuid = "eef6e190-9969-4f06-a38f-35a110a8fdc8"
-authors = ["Jakob Nybo Nissen <jakobnybonissen@gmail.com>"]
+authors = ["Jakob Nybo Nissen <jakobnybonissen@gmail.com>", "Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>"]
 version = "0.1.0"
 
 [deps]
@@ -9,6 +9,13 @@ BioGenerics = "47718e42-2ac5-11e9-14af-e5595289c2ea"
 BioSequences = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
 BioSymbols = "3c28c6f8-a34d-59c4-9654-267d177fcfa9"
 
+[compat]
+BioAlignments = "2.0.0"
+BioGenerics = "0.1"
+BioSequences = "2"
+BioSymbols = "4"
+julia = "1.6"
+
 [extras]
 BioAlignments = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e"
 BioSequences = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..1ed73b0
--- /dev/null
+++ b/README.md
@@ -0,0 +1,73 @@
+# <img src="docs/src/assets/logo.png" width="30%" align="right" /> SequenceVariation
+
+[![Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
+[![Latest Release](https://img.shields.io/github/release/BioJulia/SequenceVariation.jl.svg)](https://github.com/BioJulia/SequenceVariation.jl/releases/latest)
+[![MIT license](https://img.shields.io/badge/license-MIT-green.svg)](https://github.com/BioJulia/SequenceVariation.jl/blob/master/LICENSE)
+[![Stable documentation](https://img.shields.io/badge/docs-stable-blue.svg)](https://biojulia.github.io/SequenceVariation.jl/stable)
+[![Latest documentation](https://img.shields.io/badge/docs-dev-blue.svg)](https://biojulia.github.io/SequenceVariation.jl/dev/)
+
+> This project follows the [semver](https://semver.org) _pro forma_ and uses the [OneFlow branching model](https://www.endoflineblog.com/oneflow-a-git-branching-model-and-workflow).
+
+## Description
+
+SequenceVariation provides a Julia vocabulary for comparing genetic mutations within biological sequences.
+
+## Installation
+
+You can install SequenceVariation from the [Julia REPL](https://docs.julialang.org/en/v1/manual/getting-started/).
+Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), and enter the following:
+
+```julia
+add https://github.com/SequenceVariation.jl
+```
+
+## Testing
+
+SequenceVariation is tested against Julia `1.X` on Linux, OS X, and Windows.
+
+**Latest build status:**
+
+[![Unit tests](https://github.com/BioJulia/SequenceVariation.jl/workflows/Unit%20tests/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3A%22Unit+tests%22+branch%3Amaster)
+[![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster)
+[![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl)
+
+## Contributing
+
+We appreciate [contributions](https://github.com/BioJulia/SequenceVariation.jl/graphs/contributors) from users including reporting bugs, fixing issues, improving performance and adding new features.
+
+Take a look at the [contributing files](https://github.com/BioJulia/Contributing) for detailed contributor and maintainer guidelines, and code of conduct.
+
+### Financial contributions
+
+We also welcome financial contributions in full transparency on our [open collective](https://opencollective.com/biojulia).
+Anyone can file an expense.
+If the expense makes sense for the development the core contributors and the person who filed the expense will be reimbursed.
+
+
+## Backers & Sponsors
+
+Thank you to all our backers and sponsors!
+
+Love our work and community? [Become a backer](https://opencollective.com/biojulia#backer).
+
+[![backers](https://opencollective.com/biojulia/backers.svg?width=890)](https://opencollective.com/biojulia#backers)
+
+Does your company use BioJulia?
+Help keep BioJulia feature rich and healthy by [sponsoring the project](https://opencollective.com/biojulia#sponsor).
+Your logo will show up here with a link to your website.
+
+[![](https://opencollective.com/biojulia/sponsor/0/avatar.svg)](https://opencollective.com/biojulia/sponsor/0/website)
+[![](https://opencollective.com/biojulia/sponsor/1/avatar.svg)](https://opencollective.com/biojulia/sponsor/1/website)
+[![](https://opencollective.com/biojulia/sponsor/2/avatar.svg)](https://opencollective.com/biojulia/sponsor/2/website)
+[![](https://opencollective.com/biojulia/sponsor/3/avatar.svg)](https://opencollective.com/biojulia/sponsor/3/website)
+[![](https://opencollective.com/biojulia/sponsor/4/avatar.svg)](https://opencollective.com/biojulia/sponsor/4/website)
+[![](https://opencollective.com/biojulia/sponsor/5/avatar.svg)](https://opencollective.com/biojulia/sponsor/5/website)
+[![](https://opencollective.com/biojulia/sponsor/6/avatar.svg)](https://opencollective.com/biojulia/sponsor/6/website)
+[![](https://opencollective.com/biojulia/sponsor/7/avatar.svg)](https://opencollective.com/biojulia/sponsor/7/website)
+[![](https://opencollective.com/biojulia/sponsor/8/avatar.svg)](https://opencollective.com/biojulia/sponsor/8/website)
+[![](https://opencollective.com/biojulia/sponsor/9/avatar.svg)](https://opencollective.com/biojulia/sponsor/9/website)
+
+
+## Questions?
+
+If you have a question about contributing or using BioJulia software, come on over and chat to us on [the Julia Slack workspace](https://julialang.org/slack/), or you can try the [Bio category of the Julia discourse site](https://discourse.julialang.org/c/domain/bio).
diff --git a/docs/.gitignore b/docs/.gitignore
new file mode 100644
index 0000000..a303fff
--- /dev/null
+++ b/docs/.gitignore
@@ -0,0 +1,2 @@
+build/
+site/
diff --git a/docs/Project.toml b/docs/Project.toml
new file mode 100644
index 0000000..b284c6f
--- /dev/null
+++ b/docs/Project.toml
@@ -0,0 +1,6 @@
+[deps]
+Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+
+[compat]
+Documenter = "0.27"
diff --git a/docs/make.jl b/docs/make.jl
new file mode 100644
index 0000000..e723972
--- /dev/null
+++ b/docs/make.jl
@@ -0,0 +1,22 @@
+using Pkg
+using Documenter
+using SequenceVariation
+
+makedocs(;
+    checkdocs = :exports,
+    linkcheck = true,
+    sitename = "SequenceVariation.jl",
+    format = Documenter.HTML(),
+    modules = [SequenceVariation],
+    pages = [
+        "Home" => "index.md",
+        "API Reference" => "api.md",
+    ],
+    authors = replace(join(Pkg.TOML.parsefile("Project.toml")["authors"], ", "), r" <.*?>" => "" ) * ", The BioJulia Organisation, and other contributors."
+)
+
+deploydocs(
+    repo = "github.com/BioJulia/SequenceVariation.jl.git",
+    devbranch = "master",
+    push_preview = true,
+)
diff --git a/docs/src/api.md b/docs/src/api.md
new file mode 100644
index 0000000..548c73f
--- /dev/null
+++ b/docs/src/api.md
@@ -0,0 +1,12 @@
+```@meta
+CurrentModule = SequenceVariation
+DocTestSetup = quote
+    using SequenceVariation
+end
+```
+
+# API Reference
+
+```@autodocs
+Modules = SequenceVariation
+```
diff --git a/docs/src/assets/logo.png b/docs/src/assets/logo.png
new file mode 100644
index 0000000..e78054e
Binary files /dev/null and b/docs/src/assets/logo.png differ
diff --git a/docs/src/index.md b/docs/src/index.md
new file mode 100644
index 0000000..c454b95
--- /dev/null
+++ b/docs/src/index.md
@@ -0,0 +1,73 @@
+# SequenceVariation.jl
+
+[![Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
+[![Latest Release](https://img.shields.io/github/release/BioJulia/SequenceVariation.jl.svg)](https://github.com/BioJulia/SequenceVariation.jl/releases/latest)
+[![MIT license](https://img.shields.io/badge/license-MIT-green.svg)](https://github.com/BioJulia/SequenceVariation.jl/blob/master/LICENSE)
+[![Stable documentation](https://img.shields.io/badge/docs-stable-blue.svg)](https://biojulia.github.io/SequenceVariation.jl/stable)
+[![Latest documentation](https://img.shields.io/badge/docs-dev-blue.svg)](https://biojulia.github.io/SequenceVariation.jl/dev/)
+
+> This project follows the [semver](https://semver.org) _pro forma_ and uses the [OneFlow branching model](https://www.endoflineblog.com/oneflow-a-git-branching-model-and-workflow).
+
+## Description
+
+SequenceVariation provides a Julia vocabulary for comparing genetic mutations within biological sequences.
+
+## Installation
+
+You can install SequenceVariation from the [Julia REPL](https://docs.julialang.org/en/v1/manual/getting-started/).
+Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), and enter the following:
+
+```julia
+add https://github.com/SequenceVariation.jl
+```
+
+## Testing
+
+SequenceVariation is tested against Julia `1.X` on Linux, OS X, and Windows.
+
+**Latest build status:**
+
+[![Unit tests](https://github.com/BioJulia/SequenceVariation.jl/workflows/Unit%20tests/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3A%22Unit+tests%22+branch%3Amaster)
+[![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster)
+[![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl)
+
+## Contributing
+
+We appreciate [contributions](https://github.com/BioJulia/SequenceVariation.jl/graphs/contributors) from users including reporting bugs, fixing issues, improving performance and adding new features.
+
+Take a look at the [contributing files](https://github.com/BioJulia/Contributing) for detailed contributor and maintainer guidelines, and code of conduct.
+
+### Financial contributions
+
+We also welcome financial contributions in full transparency on our [open collective](https://opencollective.com/biojulia).
+Anyone can file an expense.
+If the expense makes sense for the development the core contributors and the person who filed the expense will be reimbursed.
+
+
+## Backers & Sponsors
+
+Thank you to all our backers and sponsors!
+
+Love our work and community? [Become a backer](https://opencollective.com/biojulia#backer).
+
+[![backers](https://opencollective.com/biojulia/backers.svg?width=890)](https://opencollective.com/biojulia#backers)
+
+Does your company use BioJulia?
+Help keep BioJulia feature rich and healthy by [sponsoring the project](https://opencollective.com/biojulia#sponsor).
+Your logo will show up here with a link to your website.
+
+[![](https://opencollective.com/biojulia/sponsor/0/avatar.svg)](https://opencollective.com/biojulia/sponsor/0/website)
+[![](https://opencollective.com/biojulia/sponsor/1/avatar.svg)](https://opencollective.com/biojulia/sponsor/1/website)
+[![](https://opencollective.com/biojulia/sponsor/2/avatar.svg)](https://opencollective.com/biojulia/sponsor/2/website)
+[![](https://opencollective.com/biojulia/sponsor/3/avatar.svg)](https://opencollective.com/biojulia/sponsor/3/website)
+[![](https://opencollective.com/biojulia/sponsor/4/avatar.svg)](https://opencollective.com/biojulia/sponsor/4/website)
+[![](https://opencollective.com/biojulia/sponsor/5/avatar.svg)](https://opencollective.com/biojulia/sponsor/5/website)
+[![](https://opencollective.com/biojulia/sponsor/6/avatar.svg)](https://opencollective.com/biojulia/sponsor/6/website)
+[![](https://opencollective.com/biojulia/sponsor/7/avatar.svg)](https://opencollective.com/biojulia/sponsor/7/website)
+[![](https://opencollective.com/biojulia/sponsor/8/avatar.svg)](https://opencollective.com/biojulia/sponsor/8/website)
+[![](https://opencollective.com/biojulia/sponsor/9/avatar.svg)](https://opencollective.com/biojulia/sponsor/9/website)
+
+
+## Questions?
+
+If you have a question about contributing or using BioJulia software, come on over and chat to us on [the Julia Slack workspace](https://julialang.org/slack/), or you can try the [Bio category of the Julia discourse site](https://discourse.julialang.org/c/domain/bio).