millironx/SequenceVariation.jl
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Mark edit(::Variation) as private function

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This commit is contained in:
Thomas A. Christensen II 2023-01-03 21:28:20 -06:00
parent 2f4f5fb5ae
commit a573693737
1 changed files with 5 additions and 5 deletions
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src/Variation.jl
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@ -24,15 +24,15 @@ function Variation(ref::S, edit::AbstractString) where {S<:BioSequence}
end end
function Variant(ref::S, vars::Vector{Variation{S,T}}) where {S<:BioSequence,T<:BioSymbol} function Variant(ref::S, vars::Vector{Variation{S,T}}) where {S<:BioSequence,T<:BioSymbol}
edits = edit.(vars) edits = _edit.(vars)
return Variant{S,T}(ref, edits) return Variant{S,T}(ref, edits)
end end
reference(v::Variation) = v.ref reference(v::Variation) = v.ref
edit(v::Variation) = v.edit _edit(v::Variation) = v.edit
mutation(v::Variation) = _mutation(edit(v)) mutation(v::Variation) = _mutation(_edit(v))
BioGenerics.leftposition(v::Variation) = leftposition(edit(v)) BioGenerics.leftposition(v::Variation) = leftposition(_edit(v))
BioGenerics.rightposition(v::Variation) = rightposition(edit(v)) BioGenerics.rightposition(v::Variation) = rightposition(_edit(v))
Base.:(==)(x::Variation, y::Variation) = x.ref == y.ref && x.edit == y.edit Base.:(==)(x::Variation, y::Variation) = x.ref == y.ref && x.edit == y.edit
Base.hash(x::Variation, h::UInt) = hash(Variation, hash((x.ref, x.edit), h)) Base.hash(x::Variation, h::UInt) = hash(Variation, hash((x.ref, x.edit), h))