millironx/SequenceVariation.jl
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Release v0.1.1 (#19)

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Thomas A. Christensen II 2022-07-21 12:59:47 +00:00 committed by GitHub
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12
CHANGELOG.md
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@ -7,6 +7,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
## [Unreleased] ## [Unreleased]
## [0.1.1] - 2022-07-21
### Added
- Constructor for `Variant` based on `Variation`s ([#18](https://github.com/BioJulia/SequenceVariation.jl/pull/18))
## [0.1.0] - 2022-07-14
### Added ### Added
- Mutation types (`Substitution`, `Deletion`, `Insertion`) - Mutation types (`Substitution`, `Deletion`, `Insertion`)
@ -16,4 +24,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- `Variant` constructor to automatically detect mutations from a `BioAlignments.PairwiseAlignment` - `Variant` constructor to automatically detect mutations from a `BioAlignments.PairwiseAlignment`
- Methods to get reference and alternate bases from a `Variation` - Methods to get reference and alternate bases from a `Variation`
[unreleased]: https://github.com/BioJulia/SequenceVariation.jl [unreleased]: https://github.com/BioJulia/SequenceVariation.jl/compare/v0.1.1...HEAD
[0.1.1]: https://github.com/BioJulia/SequenceVariation.jl/compare/v0.1.0...v0.1.1
[0.1.0]: https://github.com/BioJulia/SequenceVariation.jl/releases/tag/v0.1.0

2
Project.toml
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@ -1,7 +1,7 @@
name = "SequenceVariation" name = "SequenceVariation"
uuid = "eef6e190-9969-4f06-a38f-35a110a8fdc8" uuid = "eef6e190-9969-4f06-a38f-35a110a8fdc8"
authors = ["Jakob Nybo Nissen <jakobnybonissen@gmail.com>", "Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>"] authors = ["Jakob Nybo Nissen <jakobnybonissen@gmail.com>", "Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>"]
version = "0.1.0" version = "0.1.1"
[deps] [deps]
BioAlignments = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e" BioAlignments = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e"

4
README.md
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@ -18,7 +18,7 @@ You can install SequenceVariation from the [Julia REPL](https://docs.julialang.o
Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), and enter the following: Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), and enter the following:
```julia ```julia
add https://github.com/SequenceVariation.jl add SequenceVariation
``` ```
## Testing ## Testing
@ -27,7 +27,7 @@ SequenceVariation is tested against Julia `1.X` on Linux, OS X, and Windows.
**Latest build status:** **Latest build status:**
[![Unit tests](https://github.com/BioJulia/SequenceVariation.jl/workflows/Unit%20tests/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3A%22Unit+tests%22+branch%3Amaster) [![Unit Tests](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml)
[![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster) [![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster)
[![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl) [![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl)

4
docs/src/index.md
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@ -18,7 +18,7 @@ You can install SequenceVariation from the [Julia REPL](https://docs.julialang.o
Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), and enter the following: Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), and enter the following:
```julia ```julia
add https://github.com/SequenceVariation.jl add SequenceVariation.jl
``` ```
## Testing ## Testing
@ -27,7 +27,7 @@ SequenceVariation is tested against Julia `1.X` on Linux, OS X, and Windows.
**Latest build status:** **Latest build status:**
[![Unit tests](https://github.com/BioJulia/SequenceVariation.jl/workflows/Unit%20tests/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3A%22Unit+tests%22+branch%3Amaster) [![Unit Tests](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml)
[![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster) [![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster)
[![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl) [![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl)