millironx/SequenceVariation.jl
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Refactor Edit length to use dispatch instead of type checking

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This commit is contained in:
Thomas A. Christensen II 2022-12-30 14:54:03 -06:00
parent 22d460b15a
commit cab3029bc6
1 changed files with 2 additions and 1 deletions
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src/Edit.jl
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@ -13,9 +13,10 @@ struct Edit{S<:BioSequence,T<:BioSymbol}
x::Union{Substitution{T},Deletion,Insertion{S}} x::Union{Substitution{T},Deletion,Insertion{S}}
pos::UInt pos::UInt
end end
Base.length(e::Edit) = length(mutation(e))
Base.:(==)(e1::Edit, e2::Edit) = e1.pos == e2.pos && e1.x == e2.x Base.:(==)(e1::Edit, e2::Edit) = e1.pos == e2.pos && e1.x == e2.x
Base.hash(x::Edit, h::UInt) = hash(Edit, hash((x.x, x.pos), h)) Base.hash(x::Edit, h::UInt) = hash(Edit, hash((x.x, x.pos), h))
Base.length(e::Edit) = e isa Substitution ? 1 : length(mutation(e))
function Base.parse(::Type{T}, s::AbstractString) where {T<:Edit{Se,Sy}} where {Se,Sy} function Base.parse(::Type{T}, s::AbstractString) where {T<:Edit{Se,Sy}} where {Se,Sy}
return parse(T, String(s)) return parse(T, String(s))