millironx/SequenceVariation.jl
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Add Aqua tests

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Thomas A. Christensen II 2023-01-03 16:22:04 -06:00
parent 1942090cd6
commit cb53defe9a
4 changed files with 19 additions and 1 deletions
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4
Project.toml
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@ -10,6 +10,7 @@ BioSequences = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
BioSymbols = "3c28c6f8-a34d-59c4-9654-267d177fcfa9"
[compat]
Aqua = "0.6.0"
BioAlignments = "2,3"
BioGenerics = "0.1"
BioSequences = "2,3"
@ -17,9 +18,10 @@ BioSymbols = "4,5"
julia = "1.6"
[extras]
Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
BioAlignments = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e"
BioSequences = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[targets]
test = ["Test", "BioSequences", "BioAlignments"]
test = ["Aqua", "Test", "BioSequences", "BioAlignments"]

1
README.md
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@ -30,6 +30,7 @@ SequenceVariation is tested against Julia `1.X` on Linux, OS X, and Windows.
[![Unit Tests](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml)
[![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster)
[![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl)
[![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl)
## Contributing

1
docs/src/index.md
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@ -30,6 +30,7 @@ SequenceVariation is tested against Julia `1.X` on Linux, OS X, and Windows.
[![Unit Tests](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions/workflows/UnitTests.yml)
[![Documentation](https://github.com/BioJulia/SequenceVariation.jl/workflows/Documentation/badge.svg?branch=master)](https://github.com/BioJulia/SequenceVariation.jl/actions?query=workflow%3ADocumentation+branch%3Amaster)
[![codecov](https://codecov.io/gh/BioJulia/SequenceVariation.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/BioJulia/SequenceVariation.jl)
[![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl)
## Contributing

14
test/runtests.jl
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@ -23,6 +23,7 @@ TODO now:
* Add tests
"""
using Aqua
using BioAlignments
using BioSequences
using SequenceVariation
@ -125,3 +126,16 @@ end
# Test that out-of-bounds bases are still caught
@test_throws BoundsError Variant(PairwiseAlignment(AlignedSequence(mutseq, Alignment("7=3X", 1, 1)), refseq))
end
@testset "Aqua" begin
Aqua.test_ambiguities(SequenceVariation;recursive=false)
# TODO: Refactor `Edit` so that this test doesn't fail
# TODO: This test _should_ be set to @test_fails, but Aqua's syntax doesn't allow that
# Aqua.test_unbound_args(SequenceVariation)
Aqua.test_undefined_exports(SequenceVariation)
Aqua.test_piracy(SequenceVariation)
Aqua.test_project_extras(SequenceVariation)
Aqua.test_stale_deps(SequenceVariation)
Aqua.test_deps_compat(SequenceVariation)
Aqua.test_project_toml_formatting(SequenceVariation)
end