millironx/SequenceVariation.jl
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Update ranges to allow end position insertions

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This commit is contained in:
Thomas A. Christensen II 2022-12-17 14:59:59 -06:00
parent 5be4dce200
commit f9058c5cb3
1 changed files with 2 additions and 2 deletions
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src/SequenceVariation.jl
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@ -246,7 +246,7 @@ function is_valid(v::Variant)
# for next op. However, we cannot have two insertions at the same position, because # for next op. However, we cannot have two insertions at the same position, because
# then the order of them is ambiguous # then the order of them is ambiguous
elseif op isa Insertion elseif op isa Insertion
pos in (first(valid_positions)-1+last_was_insert:last(valid_positions)) || return false pos in (first(valid_positions)-1+last_was_insert:last(valid_positions)+1) || return false
last_was_insert = true last_was_insert = true
# Deletions obviously invalidate the reference bases that are deleted. # Deletions obviously invalidate the reference bases that are deleted.
elseif op isa Deletion elseif op isa Deletion
@ -399,7 +399,7 @@ function is_valid(v::Variation)
if op isa Substitution if op isa Substitution
return pos in eachindex(v.ref) return pos in eachindex(v.ref)
elseif op isa Insertion elseif op isa Insertion
return pos in 0:lastindex(v.ref) return pos in 0:lastindex(v.ref)+1
elseif op isa Deletion elseif op isa Deletion
return pos in 1:(lastindex(v.ref)-length(op) + 1) return pos in 1:(lastindex(v.ref)-length(op) + 1)
end end