Remove commented-out code

master
parent 73d2781ee9
commit fb5b7dfacf

@ -28,25 +28,9 @@ using BioSymbols: BioSymbol
const BA = BioAlignments
const BS = BioSequences
#=
import Automa
import Automa.RegExp: @re_str
=#
struct Unsafe end
struct Inapplicable end
#=
const CONTEXT = Automa.CodeGenContext(
vars=Automa.Variables(:p, :p_end, :p_eof, :ts, :te, :cs, :data, :mem, :byte),
generator=:goto,
checkbounds=false
)
const BYTES = Union{String, SubString{String}, Vector{UInt8}}
=#
"""
Substitution
@ -149,48 +133,6 @@ function BioGenerics.rightposition(e::Edit)
end
end
#=
@noinline throw_parse_error(T, p::Integer) = error("Failed to parse $T at byte $p")
# Parse substitution
let
machine = let
biosymbol = re"[A-Za-z]"
number = re"[0-9]+"
biosymbol.actions[:enter] = [:enter]
number.actions[:all] = [:digit]
Automa.compile(biosymbol * number * biosymbol)
end
actions = Dict(
:enter => quote
symbol = T(Char(byte))
if firstsymbol === nothing
firstsymbol = symbol
else
lastsymbol = symbol
end
end,
:digit => :(num = UInt(10)*num + (byte - 0x30) % UInt),
)
@eval begin
function Base.parse(::Type{Edit{S, T}}, data::BYTES) where {S, T}
$(Automa.generate_init_code(CONTEXT, machine))
p_eof = p_end = sizeof(data)
firstsymbol = lastsymbol = nothing
num = UInt(0)
$(Automa.generate_exec_code(CONTEXT, machine, actions))
iszero(cs) || throw_parse_error(Edit{S, T}, p)
if firstsymbol == lastsymbol
error("First symbol and last symbol are identical")
end
return Edit{S, T}(Substitution{T}(lastsymbol), num)
end
end
end
=#
# Edits are applied sequentially from first to last pos.
# The vector must always be sorted by pos.
struct Variant{S <: BioSequence, T <: BioSymbol}

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