22 commits

Author	SHA1	Message	Date
Thomas A. Christensen II	6b2bd018e2	docs: Add examples of alignment getters	2023-04-08 20:44:21 -05:00
Thomas A. Christensen II	341faa45e3	docs: Add autodocs for cigar	2023-04-08 20:43:50 -05:00
Thomas A. Christensen II	8458f74053	docs: Add autodocs for alignment	2023-04-08 20:43:30 -05:00
Thomas A. Christensen II	2d16c0b7b6	docs: Rename 'Variants' header to 'Haplotypes'	2023-04-08 20:40:17 -05:00
Thomas A. Christensen II	d0f55742d6	Add documentation for haplotype reference switching	2023-01-11 15:01:43 -06:00
Thomas A. Christensen II	ecaa995d2b	Update API documentation for different translate methods	2023-01-11 15:01:43 -06:00
Thomas A. Christensen II	a437409afc	Update test information in READMEs	2023-01-10 12:29:04 -06:00
Thomas A. Christensen II	6c86782a2c	Update documentation to reflect new reconstruct syntax	2023-01-10 11:22:06 -06:00
Thomas A. Christensen II	b80dd8c950	Rename reconstruct! function to reconstruct ... The exclamation mark is conventionally used to mark mutating functions, but reconstruct is no longer mutating, so change the notation.	2023-01-10 11:22:06 -06:00
Thomas A. Christensen II	1384783fcc	Update documentation wording to reflect new type names	2023-01-05 11:58:29 -06:00
Thomas A. Christensen II	46c84b06bb	Rename variants.md to haplotypes.md	2023-01-05 11:58:29 -06:00
Thomas A. Christensen II	5839de3ce1	Rename Variant type to Haplotype	2023-01-05 11:58:29 -06:00
Thomas A. Christensen II	fb9ab68cca	Apply Blue style to docs file	2023-01-04 11:56:45 -06:00
Thomas A. Christensen II	cb53defe9a	Add Aqua tests	2023-01-04 11:56:45 -06:00
Thomas A. Christensen II	6510ee3fc0	Add tutorial-type documentation	2023-01-04 11:56:45 -06:00
Thomas A. Christensen II	134ee771b9	Correct package install directions in docs	2023-01-04 11:56:45 -06:00
Thomas A. Christensen II	6f7110caec	Organize API docs	2023-01-04 11:56:45 -06:00
Thomas A. Christensen II	c945dc63dd	Release v0.1.1 (#19)	2022-07-21 12:59:47 +00:00
Thomas A. Christensen II	467fa4d261	Fix iterator error in API auto-documentation	2022-07-11 19:04:20 +00:00
Thomas A. Christensen II	2ccc2551f5	Add README	2022-07-11 13:25:30 -05:00
Thomas A. Christensen II	3d03740741	Update documentation	2022-07-11 13:22:55 -05:00
Thomas A. Christensen II	4ef7ba4450	Run DocumenterTools.generate()	2022-07-11 13:22:54 -05:00