millironx/SequenceVariation.jl
1
0
Fork 0
mirror of https://github.com/MillironX/SequenceVariation.jl.git synced 2024-11-22 13:29:56 +00:00
Code Issues Releases Packages Activity
WIP - biological sequence variation
161 commits 3 branches 0 tags 376 KiB
Julia 100%
Find a file
Thomas A. Christensen II c3a7788dbd
feat: Add _cigar(::Variation) function 
Add a function that can convert the information contained in an
Insertion or a Deletion into a CIGAR operator.
2023-04-08 20:19:46 -05:00
.github Add linting workflow for PRs 2023-01-04 11:56:45 -06:00
docs Add documentation for haplotype reference switching 2023-01-11 15:01:43 -06:00
src feat: Add _cigar(::Variation) function 2023-04-08 20:19:46 -05:00
test Add tests for _is_valid(::Haplotype) 2023-01-28 19:57:10 +00:00
.gitignore Add Julia gitignore 2022-07-05 09:19:06 -05:00
.JuliaFormatter.toml Declare Blue style formatting for all new documents 2023-01-04 11:56:45 -06:00
CHANGELOG.md Update CHANGELOG for v0.2.2 2023-01-28 20:07:48 +00:00
LICENSE Add license 2022-07-11 13:25:28 -05:00
Project.toml Bump version number in Project.toml to 0.2.2 2023-01-28 20:07:48 +00:00
README.md Update test information in READMEs 2023-01-10 12:29:04 -06:00

README.md

SequenceVariation

Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. Latest Release MIT license Stable documentation Latest documentation DOI

This project follows the semver pro forma and uses the OneFlow branching model.

Description

SequenceVariation provides a Julia vocabulary for comparing genetic mutations within biological sequences.

Installation

You can install SequenceVariation from the Julia REPL. Press ] to enter pkg mode, and enter the following:

add SequenceVariation

Testing

SequenceVariation is tested against Julia 1.6 (LTS), 1.X (release) and nightly on Linux.

Latest build status:

Unit Tests Documentation codecov Aqua QA

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the contributing files for detailed contributor and maintainer guidelines, and code of conduct.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

Love our work and community? Become a backer.

backers

Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project. Your logo will show up here with a link to your website.

Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on the Julia Slack workspace, or you can try the Bio category of the Julia discourse site.