millironx/SequenceVariation.jl
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WIP - biological sequence variation
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Thomas A. Christensen II d8435be115 Add Variation-level validation for Variants 
Testing indicates that some Variants (particularly those with insertions
and/or clips at the send of the query sequence) will validate fine as a
Variant, but will fail validation as a Variation. This problem is
particularly annoying when constructing Variants in the REPL, as the
creation will complete successfully, but the show of the Variant will
error out. To fix this, leverage the existing validation of Variation to
check each Edit within a Variant upon construction.
2022-12-17 22:02:15 +00:00
.github Remove 32-bit arches from unit testing CI workflow 2022-07-11 19:07:07 +00:00
docs Release v0.1.1 (#19) 2022-07-21 12:59:47 +00:00
src Add Variation-level validation for Variants 2022-12-17 22:02:15 +00:00
test Add test for ending substitutions being invalid 2022-12-17 22:02:15 +00:00
.gitignore Add Julia gitignore 2022-07-05 09:19:06 -05:00
CHANGELOG.md Update CHANGELOG for v0.1.3 2022-11-22 18:07:53 +00:00
LICENSE Add license 2022-07-11 13:25:28 -05:00
Project.toml Bump version number in Project.toml 2022-11-22 18:07:53 +00:00
README.md Release v0.1.1 (#19) 2022-07-21 12:59:47 +00:00

README.md

SequenceVariation

Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public. Latest Release MIT license Stable documentation Latest documentation

This project follows the semver pro forma and uses the OneFlow branching model.

Description

SequenceVariation provides a Julia vocabulary for comparing genetic mutations within biological sequences.

Installation

You can install SequenceVariation from the Julia REPL. Press ] to enter pkg mode, and enter the following:

add SequenceVariation

Testing

SequenceVariation is tested against Julia 1.X on Linux, OS X, and Windows.

Latest build status:

Unit Tests Documentation codecov

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the contributing files for detailed contributor and maintainer guidelines, and code of conduct.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

Love our work and community? Become a backer.

backers

Does your company use BioJulia? Help keep BioJulia feature rich and healthy by sponsoring the project. Your logo will show up here with a link to your website.

Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on the Julia Slack workspace, or you can try the Bio category of the Julia discourse site.