[{"location":"#XAM-1","page":"Home","title":"XAM","text":"","category":"section"},{"location":"#","page":"Home","title":"Home","text":"(Image: Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.) (Image: Latest Release) (Image: MIT license) (Image: Stable documentation) (Image: Latest documentation) (Image: Join the chat at https://gitter.im/BioJulia/XAM.jl)","category":"page"},{"location":"#Description-1","page":"Home","title":"Description","text":"","category":"section"},{"location":"#","page":"Home","title":"Home","text":"XAM provides I/O and utilities for manipulating SAM and BAM formatted alignment map files.","category":"page"},{"location":"#Installation-1","page":"Home","title":"Installation","text":"","category":"section"},{"location":"#","page":"Home","title":"Home","text":"XAM is made available to install through BioJulia's package registry.","category":"page"},{"location":"#","page":"Home","title":"Home","text":"Julia by default only watches the \"General\" package registry, so before you start, you should add the BioJulia package registry.","category":"page"},{"location":"#","page":"Home","title":"Home","text":"Start a julia terminal, hit the ] key to enter pkg mode (you should see the prompt change from julia> to pkg> ), then enter the following command:","category":"page"},{"location":"#","page":"Home","title":"Home","text":"registry add https://github.com/BioJulia/BioJuliaRegistry.git","category":"page"},{"location":"#","page":"Home","title":"Home","text":"After you've added the registry, you can install XAM from the julia REPL. Press ] to enter pkg mode again, and enter the following:","category":"page"},{"location":"#","page":"Home","title":"Home","text":"add XAM","category":"page"},{"location":"#","page":"Home","title":"Home","text":"If you are interested in the cutting edge of the development, please check out the develop branch to try new features before release.","category":"page"},{"location":"#Testing-1","page":"Home","title":"Testing","text":"","category":"section"},{"location":"#","page":"Home","title":"Home","text":"XAM is tested against Julia 1.X on Linux, OS X, and Windows.","category":"page"},{"location":"#","page":"Home","title":"Home","text":"Latest build status:","category":"page"},{"location":"#","page":"Home","title":"Home","text":"(Image: ) (Image: Build status) (Image: codecov)","category":"page"},{"location":"#Contributing-1","page":"Home","title":"Contributing","text":"","category":"section"},{"location":"#","page":"Home","title":"Home","text":"We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.","category":"page"},{"location":"#","page":"Home","title":"Home","text":"Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.","category":"page"},{"location":"#Financial-contributions-1","page":"Home","title":"Financial contributions","text":"","category":"section"},{"location":"#","page":"Home","title":"Home","text":"We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be \"merged\" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.","category":"page"},{"location":"#Backers-and-Sponsors-1","page":"Home","title":"Backers & Sponsors","text":"","category":"section"},{"location":"#","page":"Home","title":"Home","text":"Thank you to all our backers and sponsors!","category":"page"},{"location":"#","page":"Home","title":"Home","text":"Love our work and community? Become a backer.","category":"page"},{"location":"#","page":"Home","title":"Home","text":"(Image: backers)","category":"page"},{"location":"#","page":"Home","title":"Home","text":"DoesyourcompanyuseBioJulia?HelpkeepBioJuliafeaturerichandhealthybysponsoringtheproject.Yourlogowillshowupherewithalinktoyourw
