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Merge branch 'hotfix/issue-34'
This commit is contained in:
commit
22667dc7af
4 changed files with 21 additions and 20 deletions
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@ -1,7 +1,7 @@
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name = "XAM"
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uuid = "d759349c-bcba-11e9-07c2-5b90f8f05f7c"
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authors = ["Kenta Sato <bicycle1885@gmail.com>", "Ben J. Ward <ward9250@gmail.com>", "Ciarán O'Mara <Ciaran.OMara@utas.edu.au>"]
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version = "0.2.6"
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version = "0.2.7"
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[deps]
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Automa = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"
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@ -94,17 +94,21 @@ end
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Read a `Record` into `rec`; overwriting or adding to existing field values.
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It is assumed that `rec` is already initialized or empty.
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"""
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function Base.read!(rdr::Reader, rec::Record)
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function Base.read!(rdr::Reader, record::Record)
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cs, ln, f = readrecord!(rdr.state.stream, rec, (rdr.state.state, rdr.state.linenum))
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cs, ln, found = readrecord!(rdr.state.stream, record, (rdr.state.state, rdr.state.linenum))
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rdr.state.state = cs
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rdr.state.linenum = ln
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rdr.state.filled = f
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rdr.state.filled = found
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if !f
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cs == 0 && throw(EOFError())
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throw(ArgumentError("malformed SAM file"))
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if found
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return record
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end
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return rec
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if cs == 0 || eof(rdr.state.stream)
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throw(EOFError())
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end
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throw(ArgumentError("malformed SAM file"))
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end
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@ -134,11 +134,10 @@ const sam_machine_metainfo, sam_machine_record, sam_machine_header, sam_machine_
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cat(re"\r?", lf)
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end
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header′ = rep(cat(metainfo, newline))
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header′.actions[:exit] = [:header]
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header = cat(header′, opt(any() \ cat('@'))) # look ahead
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header = rep(cat(metainfo, newline))
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header.actions[:exit] = [:header]
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body = rep(cat(record, newline))
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body = record * rep(newline * record) * opt(newline)
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body.actions[:exit] = [:body]
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sam = cat(header, body)
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@ -200,10 +199,6 @@ const sam_actions_header = merge(
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finish_header = true
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if !eof(stream)
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p -= 1 # cancel look-ahead
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end
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@escape
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end
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)
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@ -308,10 +303,6 @@ Automa.Stream.generate_reader(
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const sam_loopcode_header = quote
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if cs < 0
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throw(ArgumentError("malformed metainfo at line $(linenum)"))
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end
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if finish_header
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@goto __return__
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end
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@ -194,5 +194,11 @@
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close(reader)
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# Test blank file.
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file_sam = joinpath(samdir, "xx#blank.sam")
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records = open(collect, SAM.Reader, file_sam)
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@test records == []
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end
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end
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