From 282d80a758d2178579fd822c631816aea7eca86c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ciar=C3=A1n=20O=27Mara?= <Ciaran.OMara@utas.edu.au>
Date: Fri, 17 Jan 2020 16:38:16 +1100
Subject: [PATCH] Continuous Integration

---
 .codecov.yml                    |  1 +
 .github/workflows/UnitTests.yml | 22 ++++++++++++++++++++++
 ci_prep.jl                      |  3 +++
 coverage/Project.toml           |  2 ++
 coverage/coverage.jl            | 11 +++++++++++
 5 files changed, 39 insertions(+)
 create mode 100644 .codecov.yml
 create mode 100644 .github/workflows/UnitTests.yml
 create mode 100644 ci_prep.jl
 create mode 100644 coverage/Project.toml
 create mode 100644 coverage/coverage.jl

diff --git a/.codecov.yml b/.codecov.yml
new file mode 100644
index 0000000..69cb760
--- /dev/null
+++ b/.codecov.yml
@@ -0,0 +1 @@
+comment: false
diff --git a/.github/workflows/UnitTests.yml b/.github/workflows/UnitTests.yml
new file mode 100644
index 0000000..cbaf083
--- /dev/null
+++ b/.github/workflows/UnitTests.yml
@@ -0,0 +1,22 @@
+name: Unit tests
+
+on: [push, pull_request]
+
+jobs:
+  test:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        julia-version: ['1.1', '1.2', '1.3']
+        julia-arch: [x64]
+        os: [ubuntu-latest, windows-latest, macOS-latest]
+
+    steps:
+      - uses: actions/checkout@v1.0.0
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.julia-version }}
+          arch: ${{ matrix.julia-arch }}
+      - name: Install dependencies
+        run: julia ci_prep.jl
+      - uses: julia-actions/julia-runtest@master
diff --git a/ci_prep.jl b/ci_prep.jl
new file mode 100644
index 0000000..f3a7535
--- /dev/null
+++ b/ci_prep.jl
@@ -0,0 +1,3 @@
+using Pkg.Registry
+Registry.add(Registry.RegistrySpec(url = "https://github.com/BioJulia/BioJuliaRegistry.git"))
+Registry.add(Registry.RegistrySpec(url = "https://github.com/JuliaRegistries/General.git"))
diff --git a/coverage/Project.toml b/coverage/Project.toml
new file mode 100644
index 0000000..4fbdc47
--- /dev/null
+++ b/coverage/Project.toml
@@ -0,0 +1,2 @@
+[deps]
+Coverage = "a2441757-f6aa-5fb2-8edb-039e3f45d037"
diff --git a/coverage/coverage.jl b/coverage/coverage.jl
new file mode 100644
index 0000000..3d33ed9
--- /dev/null
+++ b/coverage/coverage.jl
@@ -0,0 +1,11 @@
+get(ENV, "TRAVIS_OS_NAME", "") == "linux" || exit()
+get(ENV, "TRAVIS_JULIA_VERSION", "") == "1.3" || exit()
+
+using Pkg
+Pkg.instantiate()
+
+using Coverage
+
+cd(joinpath(@__DIR__, "..")) do
+   Codecov.submit(Codecov.process_folder())
+end