millironx/XAM.jl
1
0
Fork 0
mirror of https://github.com/MillironX/XAM.jl.git synced 2024-11-14 22:33:14 +00:00
Code Issues Releases Packages Activity

build based on 54729a2

Browse source
This commit is contained in:
zeptodoctor 2021-04-29 00:04:48 +00:00
parent 46cd772205
commit 4246776c84
12 changed files with 15956 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

260
previews/PR38/assets/documenter.js Normal file
View file

@ -0,0 +1,260 @@
// Generated by Documenter.jl
requirejs.config({
paths: {
'highlight-julia': 'https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.15.10/languages/julia.min',
'headroom': 'https://cdnjs.cloudflare.com/ajax/libs/headroom/0.10.3/headroom.min',
'jqueryui': 'https://cdnjs.cloudflare.com/ajax/libs/jqueryui/1.12.1/jquery-ui.min',
'katex-auto-render': 'https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.11.1/contrib/auto-render.min',
'jquery': 'https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min',
'headroom-jquery': 'https://cdnjs.cloudflare.com/ajax/libs/headroom/0.10.3/jQuery.headroom.min',
'katex': 'https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.11.1/katex.min',
'highlight': 'https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.15.10/highlight.min',
'highlight-julia-repl': 'https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.15.10/languages/julia-repl.min',
},
shim: {
"highlight-julia": {
"deps": [
"highlight"
]
},
"katex-auto-render": {
"deps": [
"katex"
]
},
"headroom-jquery": {
"deps": [
"jquery",
"headroom"
]
},
"highlight-julia-repl": {
"deps": [
"highlight"
]
}
}
});
////////////////////////////////////////////////////////////////////////////////
require(['jquery', 'katex', 'katex-auto-render'], function($, katex, renderMathInElement) {
$(document).ready(function() {
renderMathInElement(
document.body,
{
"delimiters": [
{
"left": "$",
"right": "$",
"display": false
},
{
"left": "$$",
"right": "$$",
"display": true
},
{
"left": "\\[",
"right": "\\]",
"display": true
}
]
}
);
})
})
////////////////////////////////////////////////////////////////////////////////
require(['jquery', 'highlight', 'highlight-julia', 'highlight-julia-repl'], function($, hljs) {
$(document).ready(function() {
hljs.initHighlighting();
})
})
////////////////////////////////////////////////////////////////////////////////
require(['jquery', 'headroom', 'headroom-jquery'], function($, Headroom) {
// Manages the top navigation bar (hides it when the user starts scrolling down on the
// mobile).
window.Headroom = Headroom; // work around buggy module loading?
$(document).ready(function() {
$('#documenter .docs-navbar').headroom({
"tolerance": {"up": 10, "down": 10},
});
})
})
////////////////////////////////////////////////////////////////////////////////
require(['jquery'], function($) {
// Modal settings dialog
$(document).ready(function() {
var settings = $('#documenter-settings');
$('#documenter-settings-button').click(function(){
settings.toggleClass('is-active');
});
// Close the dialog if X is clicked
$('#documenter-settings button.delete').click(function(){
settings.removeClass('is-active');
});
// Close dialog if ESC is pressed
$(document).keyup(function(e) {
if (e.keyCode == 27) settings.removeClass('is-active');
});
});
})
////////////////////////////////////////////////////////////////////////////////
require(['jquery'], function($) {
// Manages the showing and hiding of the sidebar.
$(document).ready(function() {
var sidebar = $("#documenter > .docs-sidebar");
var sidebar_button = $("#documenter-sidebar-button")
sidebar_button.click(function(ev) {
ev.preventDefault();
sidebar.toggleClass('visible');
if (sidebar.hasClass('visible')) {
// Makes sure that the current menu item is visible in the sidebar.
$("#documenter .docs-menu a.is-active").focus();
}
});
$("#documenter > .docs-main").bind('click', function(ev) {
if ($(ev.target).is(sidebar_button)) {
return;
}
if (sidebar.hasClass('visible')) {
sidebar.removeClass('visible');
}
});
})
// Resizes the package name / sitename in the sidebar if it is too wide.
// Inspired by: https://github.com/davatron5000/FitText.js
$(document).ready(function() {
e = $("#documenter .docs-autofit");
function resize() {
var L = parseInt(e.css('max-width'), 10);
var L0 = e.width();
if(L0 > L) {
var h0 = parseInt(e.css('font-size'), 10);
e.css('font-size', L * h0 / L0);
// TODO: make sure it survives resizes?
}
}
// call once and then register events
resize();
$(window).resize(resize);
$(window).on('orientationchange', resize);
});
// Scroll the navigation bar to the currently selected menu item
$(document).ready(function() {
var sidebar = $("#documenter .docs-menu").get(0);
var active = $("#documenter .docs-menu .is-active").get(0);
if(typeof active !== 'undefined') {
sidebar.scrollTop = active.offsetTop - sidebar.offsetTop - 15;
}
})
})
////////////////////////////////////////////////////////////////////////////////
require(['jquery'], function($) {
function set_theme(theme) {
var active = null;
var disabled = [];
for (var i = 0; i < document.styleSheets.length; i++) {
var ss = document.styleSheets[i];
var themename = ss.ownerNode.getAttribute("data-theme-name");
if(themename === null) continue; // ignore non-theme stylesheets
// Find the active theme
if(themename === theme) active = ss;
else disabled.push(ss);
}
if(active !== null) {
active.disabled = false;
if(active.ownerNode.getAttribute("data-theme-primary") === null) {
document.getElementsByTagName('html')[0].className = "theme--" + theme;
} else {
document.getElementsByTagName('html')[0].className = "";
}
disabled.forEach(function(ss){
ss.disabled = true;
});
}
// Store the theme in localStorage
if(typeof(window.localStorage) !== "undefined") {
window.localStorage.setItem("documenter-theme", theme);
} else {
console.error("Browser does not support window.localStorage");
}
}
// Theme picker setup
$(document).ready(function() {
// onchange callback
$('#documenter-themepicker').change(function themepick_callback(ev){
var themename = $('#documenter-themepicker option:selected').attr('value');
set_theme(themename);
});
// Make sure that the themepicker displays the correct theme when the theme is retrieved
// from localStorage
if(typeof(window.localStorage) !== "undefined") {
var theme = window.localStorage.getItem("documenter-theme");
if(theme !== null) {
$('#documenter-themepicker option').each(function(i,e) {
e.selected = (e.value === theme);
})
}
}
})
})
////////////////////////////////////////////////////////////////////////////////
require(['jquery'], function($) {
// update the version selector with info from the siteinfo.js and ../versions.js files
$(document).ready(function() {
var version_selector = $("#documenter .docs-version-selector");
var version_selector_select = $("#documenter .docs-version-selector select");
version_selector_select.change(function(x) {
target_href = version_selector_select.children("option:selected").get(0).value;
window.location.href = target_href;
});
// add the current version to the selector based on siteinfo.js, but only if the selector is empty
if (typeof DOCUMENTER_CURRENT_VERSION !== 'undefined' && $('#version-selector > option').length == 0) {
var option = $("<option value='#' selected='selected'>" + DOCUMENTER_CURRENT_VERSION + "</option>");
version_selector_select.append(option);
}
if (typeof DOC_VERSIONS !== 'undefined') {
var existing_versions = version_selector_select.children("option");
var existing_versions_texts = existing_versions.map(function(i,x){return x.text});
DOC_VERSIONS.forEach(function(each) {
var version_url = documenterBaseURL + "/../" + each;
var existing_id = $.inArray(each, existing_versions_texts);
// if not already in the version selector, add it as a new option,
// otherwise update the old option with the URL and enable it
if (existing_id == -1) {
var option = $("<option value='" + version_url + "'>" + each + "</option>");
version_selector_select.append(option);
} else {
var option = existing_versions[existing_id];
option.value = version_url;
option.disabled = false;
}
});
}
// only show the version selector if the selector has been populated
if (version_selector_select.children("option").length > 0) {
version_selector.toggleClass("visible");
}
})
})

26
previews/PR38/assets/logo.svg Normal file
View file

@ -0,0 +1,26 @@
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 136.48101 51.472999">
<g id="bubble-helix">
<circle cx="5.9792" cy="20.3" r="5.9792" fill="#945bb0"/>
<circle cx="21.317" cy="39.5" r="4.9393" fill="#4266d5"/>
<circle cx="16.378" cy="11.7" r="4.9393" fill="#c93d39"/>
<circle cx="35.095" cy="35.9" r="5.9792" fill="#945bb0"/>
<circle cx="47.184" cy="23.8" r="7.409" fill="#4266d5"/>
<circle cx="28.986" cy="9.7" r="4.5494" fill="#3b972e"/>
<circle cx="89.428" cy="46.5" r="4.9393" fill="#c93d39"/>
<circle cx="71.62" cy="5.6" r="5.5892" fill="#945bb0"/>
<circle cx="121.01" cy="15.5" r="5.5892" fill="#c93d39"/>
<circle cx="59.662" cy="30.3" r="2.4697" fill="#4266d5"/>
<circle cx="103.6" cy="19.9" r="3.2496" fill="#c93d39"/>
<circle cx="123.61" cy="36.5" r="2.7296" fill="#4266d5"/>
<circle cx="127.64" cy="5.2" r="3.8995" fill="#3b972e"/>
<circle cx="132.58" cy="39.2" r="3.8995" fill="#945bb0"/>
<circle cx="67.591" cy="37.4" r="3.3795" fill="#3b972e"/>
<circle cx="95.017" cy="13.9" r="4.2894" fill="#4266d5"/>
<circle cx="77.729" cy="42.9" r="3.8995" fill="#945bb0"/>
<circle cx="102.56" cy="42.0" r="5.8492" fill="#4266d5"/>
<circle cx="113.6" cy="28.8" r="6.7591" fill="#3b972e"/>
<circle cx="57.582" cy="11.0" r="6.3691" fill="#c93d39"/>
<circle cx="38.735" cy="14.8" r="3.3795" fill="#c93d39"/>
<circle cx="84.618" cy="7.9" r="5.3293" fill="#3b972e"/>
</g>
</svg>
Side by side

After

Width:  |  Height:  |  Size: 1.4 KiB

247
previews/PR38/assets/search.js Normal file
View file

@ -0,0 +1,247 @@
// Generated by Documenter.jl
requirejs.config({
paths: {
'lunr': 'https://cdnjs.cloudflare.com/ajax/libs/lunr.js/2.3.6/lunr.min',
'lodash': 'https://cdnjs.cloudflare.com/ajax/libs/lodash.js/4.17.15/lodash.min',
'jquery': 'https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min',
}
});
////////////////////////////////////////////////////////////////////////////////
require(['jquery', 'lunr', 'lodash'], function($, lunr, _) {
$(document).ready(function() {
// parseUri 1.2.2
// (c) Steven Levithan <stevenlevithan.com>
// MIT License
function parseUri (str) {
var o = parseUri.options,
m = o.parser[o.strictMode ? "strict" : "loose"].exec(str),
uri = {},
i = 14;
while (i--) uri[o.key[i]] = m[i] || "";
uri[o.q.name] = {};
uri[o.key[12]].replace(o.q.parser, function ($0, $1, $2) {
if ($1) uri[o.q.name][$1] = $2;
});
return uri;
};
parseUri.options = {
strictMode: false,
key: ["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"],
q: {
name: "queryKey",
parser: /(?:^|&)([^&=]*)=?([^&]*)/g
},
parser: {
strict: /^(?:([^:\/?#]+):)?(?:\/\/((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?))?((((?:[^?#\/]*\/)*)([^?#]*))(?:\?([^#]*))?(?:#(.*))?)/,
loose: /^(?:(?![^:@]+:[^:@\/]*@)([^:\/?#.]+):)?(?:\/\/)?((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/
}
};
$("#search-form").submit(function(e) {
e.preventDefault()
})
// list below is the lunr 2.1.3 list minus the intersect with names(Base)
// (all, any, get, in, is, only, which) and (do, else, for, let, where, while, with)
// ideally we'd just filter the original list but it's not available as a variable
lunr.stopWordFilter = lunr.generateStopWordFilter([
'a',
'able',
'about',
'across',
'after',
'almost',
'also',
'am',
'among',
'an',
'and',
'are',
'as',
'at',
'be',
'because',
'been',
'but',
'by',
'can',
'cannot',
'could',
'dear',
'did',
'does',
'either',
'ever',
'every',
'from',
'got',
'had',
'has',
'have',
'he',
'her',
'hers',
'him',
'his',
'how',
'however',
'i',
'if',
'into',
'it',
'its',
'just',
'least',
'like',
'likely',
'may',
'me',
'might',
'most',
'must',
'my',
'neither',
'no',
'nor',
'not',
'of',
'off',
'often',
'on',
'or',
'other',
'our',
'own',
'rather',
'said',
'say',
'says',
'she',
'should',
'since',
'so',
'some',
'than',
'that',
'the',
'their',
'them',
'then',
'there',
'these',
'they',
'this',
'tis',
'to',
'too',
'twas',
'us',
'wants',
'was',
'we',
'were',
'what',
'when',
'who',
'whom',
'why',
'will',
'would',
'yet',
'you',
'your'
])
// add . as a separator, because otherwise "title": "Documenter.Anchors.add!"
// would not find anything if searching for "add!", only for the entire qualification
lunr.tokenizer.separator = /[\s\-\.]+/
// custom trimmer that doesn't strip @ and !, which are used in julia macro and function names
lunr.trimmer = function (token) {
return token.update(function (s) {
return s.replace(/^[^a-zA-Z0-9@!]+/, '').replace(/[^a-zA-Z0-9@!]+$/, '')
})
}
lunr.Pipeline.registerFunction(lunr.stopWordFilter, 'juliaStopWordFilter')
lunr.Pipeline.registerFunction(lunr.trimmer, 'juliaTrimmer')
var index = lunr(function () {
this.ref('location')
this.field('title',{boost: 100})
this.field('text')
documenterSearchIndex['docs'].forEach(function(e) {
this.add(e)
}, this)
})
var store = {}
documenterSearchIndex['docs'].forEach(function(e) {
store[e.location] = {title: e.title, category: e.category}
})
$(function(){
searchresults = $('#documenter-search-results');
searchinfo = $('#documenter-search-info');
searchbox = $('#documenter-search-query');
function update_search(querystring) {
tokens = lunr.tokenizer(querystring)
results = index.query(function (q) {
tokens.forEach(function (t) {
q.term(t.toString(), {
fields: ["title"],
boost: 100,
usePipeline: true,
editDistance: 0,
wildcard: lunr.Query.wildcard.NONE
})
q.term(t.toString(), {
fields: ["title"],
boost: 10,
usePipeline: true,
editDistance: 2,
wildcard: lunr.Query.wildcard.NONE
})
q.term(t.toString(), {
fields: ["text"],
boost: 1,
usePipeline: true,
editDistance: 0,
wildcard: lunr.Query.wildcard.NONE
})
})
})
searchinfo.text("Number of results: " + results.length)
searchresults.empty()
results.forEach(function(result) {
data = store[result.ref]
link = $('<a class="docs-label">'+data.title+'</a>')
link.attr('href', documenterBaseURL+'/'+result.ref)
cat = $('<span class="docs-category">('+data.category+')</span>')
li = $('<li>').append(link).append(" ").append(cat)
searchresults.append(li)
})
}
function update_search_box() {
querystring = searchbox.val()
update_search(querystring)
}
searchbox.keyup(_.debounce(update_search_box, 250))
searchbox.change(update_search_box)
search_query_uri = parseUri(window.location).queryKey["q"]
if(search_query_uri !== undefined) {
search_query = decodeURIComponent(search_query_uri.replace(/\+/g, '%20'))
searchbox.val(search_query)
}
update_search_box();
})
})
})

7628
previews/PR38/assets/themes/documenter-dark.css Normal file
View file

File diff suppressed because it is too large Load diff

7614
previews/PR38/assets/themes/documenter-light.css Normal file
View file

File diff suppressed because it is too large Load diff

42
previews/PR38/assets/themeswap.js Normal file
View file

@ -0,0 +1,42 @@
// Small function to quickly swap out themes. Gets put into the <head> tag..
function set_theme_from_local_storage() {
// Browser does not support Web Storage, bail early.
if(typeof(window.localStorage) === "undefined") return;
// Get the user-picked theme from localStorage. May be `null`, which means the default
// theme.
var theme = window.localStorage.getItem("documenter-theme");
// Initialize a few variables for the loop:
//
// - active: will contain the index of the theme that should be active. Note that there
// is no guarantee that localStorage contains sane values. If `active` stays `null`
// we either could not find the theme or it is the default (primary) theme anyway.
// Either way, we then need to stick to the primary theme.
//
// - disabled: style sheets that should be disabled (i.e. all the theme style sheets
// that are not the currently active theme)
var active = null; var disabled = [];
for (var i = 0; i < document.styleSheets.length; i++) {
var ss = document.styleSheets[i];
// The <link> tag of each style sheet is expected to have a data-theme-name attribute
// which must contain the name of the theme. The names in localStorage much match this.
var themename = ss.ownerNode.getAttribute("data-theme-name");
// attribute not set => non-theme stylesheet => ignore
if(themename === null) continue;
// To distinguish the default (primary) theme, it needs to have the data-theme-primary
// attribute set.
var isprimary = (ss.ownerNode.getAttribute("data-theme-primary") !== null);
// If we find a matching theme (and it's not the default), we'll set active to non-null
if(!isprimary && themename === theme) active = i;
// Store the style sheets of inactive themes so that we could disable them
if(themename !== theme) disabled.push(ss);
}
if(active !== null) {
// If we did find an active theme, we'll (1) add the theme--$(theme) class to <html>
document.getElementsByTagName('html')[0].className = "theme--" + theme;
// and (2) disable all the other theme stylesheets
disabled.forEach(function(ss){
ss.disabled = true;
});
}
}
set_theme_from_local_storage();

2
previews/PR38/index.html Normal file
View file

File diff suppressed because one or more lines are too long

24
previews/PR38/man/api/index.html Normal file
View file

File diff suppressed because one or more lines are too long

107
previews/PR38/man/hts-files/index.html Normal file
View file

File diff suppressed because one or more lines are too long

2
previews/PR38/search/index.html Normal file
View file

@ -0,0 +1,2 @@
<!DOCTYPE html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Search · XAM.jl</title><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.11.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.11.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.11.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.11.1/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../assets/documenter.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-dark.css" data-theme-name="documenter-dark"/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><a class="docs-logo" href="../"><img src="../assets/logo.svg" alt="XAM.jl logo"/></a><div class="docs-package-name"><span class="docs-autofit">XAM.jl</span></div><form class="docs-search" action><input class="docs-search-query" id="documenter-search-query" name="q" type="text" placeholder="Search docs"/></form><ul class="docs-menu"><li><a class="tocitem" href="../">Home</a></li><li><a class="tocitem" href="../man/hts-files/">SAM and BAM</a></li><li><a class="tocitem" href="../man/api/">API Reference</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Search</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Search</a></li></ul></nav><div class="docs-right"><a class="docs-settings-button fas fa-cog" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-sidebar-button fa fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a></div></header><article><p id="documenter-search-info">Loading search...</p><ul id="documenter-search-results"></ul></article></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> on <span class="colophon-date" title="Thursday 29 April 2021 00:04">Thursday 29 April 2021</span>. Using Julia version 1.6.1.</p></section><footer class="modal-card-foot"></footer></div></div></div></body><script src="../search_index.js"></script><script src="../assets/search.js"></script></html>

3
previews/PR38/search_index.js Normal file
View file

File diff suppressed because one or more lines are too long

1
previews/PR38/siteinfo.js Normal file
View file

@ -0,0 +1 @@
var DOCUMENTER_CURRENT_VERSION = "previews/PR38";