millironx/XAM.jl
1
0
Fork 0
mirror of https://github.com/MillironX/XAM.jl.git synced 2024-12-23 13:28:16 +00:00
Code Issues Releases Packages Activity

Add tests for issue #31

Browse source 
Test for expected results as decribed in https://github.com/BioJulia/XAM.jl/issues/31.

# Conflicts:
#	test/runtests.jl
This commit is contained in:
Ciarán O’Mara 2021-04-01 13:55:03 +11:00
parent 9dec90fd9c
commit 48ceb8d20e
4 changed files with 11 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

BIN
test/data/SRR7993829_1.100K.forward.bam Normal file
View file

Binary file not shown.

BIN
test/data/SRR7993829_1.100K.forward.bam.bai Normal file
View file

Binary file not shown.

1
test/runtests.jl
View file

@ -26,3 +26,4 @@ end
include("test_sam.jl") include("test_sam.jl")
include("test_bam.jl") include("test_bam.jl")
include("test_crosscheck.jl") include("test_crosscheck.jl")
include("test_issues.jl")

10
test/test_issues.jl Normal file
View file

@ -0,0 +1,10 @@
@testset "Issues" begin
# https://github.com/BioJulia/XAM.jl/issues/31
path_bam = joinpath("data", "SRR7993829_1.100K.forward.bam")
open(BAM.Reader, path_bam, index = path_bam * ".bai") do reader
@test count((r)-> true, eachoverlap(reader, "JH584304.1", 51000:51200)) == 0
@test count((r)-> true, eachoverlap(reader, "JH584304.1", 51000:51715)) == 1
end
end