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Add tests for issue #31

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Test for expected results as decribed in https://github.com/BioJulia/XAM.jl/issues/31.

# Conflicts:
#	test/runtests.jl
This commit is contained in:
Ciarán O’Mara 2021-04-01 13:55:03 +11:00
parent 9dec90fd9c
commit 48ceb8d20e
4 changed files with 11 additions and 0 deletions
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test/data/SRR7993829_1.100K.forward.bam Normal file
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test/runtests.jl
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@ -26,3 +26,4 @@ end
include("test_sam.jl")
include("test_bam.jl")
include("test_crosscheck.jl")
include("test_issues.jl")

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test/test_issues.jl Normal file
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@ -0,0 +1,10 @@
@testset "Issues" begin
# https://github.com/BioJulia/XAM.jl/issues/31
path_bam = joinpath("data", "SRR7993829_1.100K.forward.bam")
open(BAM.Reader, path_bam, index = path_bam * ".bai") do reader
@test count((r)-> true, eachoverlap(reader, "JH584304.1", 51000:51200)) == 0
@test count((r)-> true, eachoverlap(reader, "JH584304.1", 51000:51715)) == 1
end
end