millironx/XAM.jl
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Merge pull request #12 from BioJulia/hotfix/iterate

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hotfix/iterate
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Ciarán O'Mara 2020-05-22 12:53:43 +10:00 committed by GitHub
commit 551a5906c5
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2 changed files with 2 additions and 2 deletions
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2
Project.toml
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@ -1,7 +1,7 @@
name = "XAM" name = "XAM"
uuid = "d759349c-bcba-11e9-07c2-5b90f8f05f7c" uuid = "d759349c-bcba-11e9-07c2-5b90f8f05f7c"
authors = ["Kenta Sato <bicycle1885@gmail.com>", "Ben J. Ward <ward9250@gmail.com>", "Ciarán O'Mara <Ciaran.OMara@utas.edu.au>"] authors = ["Kenta Sato <bicycle1885@gmail.com>", "Ben J. Ward <ward9250@gmail.com>", "Ciarán O'Mara <Ciaran.OMara@utas.edu.au>"]
version = "0.2.3" version = "0.2.4"
[deps] [deps]
Automa = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b" Automa = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"

2
src/bam/overlap.jl
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@ -47,7 +47,7 @@ end
function Base.iterate(iter::OverlapIterator) function Base.iterate(iter::OverlapIterator)
refindex = findfirst(isequal(iter.refname), iter.reader.refseqnames) refindex = findfirst(isequal(iter.refname), iter.reader.refseqnames)
if refindex == 0 if refindex === nothing
throw(ArgumentError("sequence name $(iter.refname) is not found in the header")) throw(ArgumentError("sequence name $(iter.refname) is not found in the header"))
end end
@assert iter.reader.index !== nothing @assert iter.reader.index !== nothing