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Tests for in-place-reading pattern
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@ -196,6 +196,29 @@ end
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end
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end
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end
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end
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end
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end
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@testset "In-Place-Reading Pattern" begin
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file_sam = joinpath(samdir, "ce#5b.sam")
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records = open(collect, SAM.Reader, file_sam)
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reader = open(SAM.Reader, file_sam)
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record = SAM.Record()
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i = 0
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while !eof(reader)
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empty!(record) # Reset the record.
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read!(reader, record)
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i = i + 1
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@test records[i] == record
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end
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close(reader)
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end
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end
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end
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@testset "BAM" begin
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@testset "BAM" begin
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@ -414,6 +437,27 @@ end
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end
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end
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end
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end
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@testset "In-Place-Reading Pattern" begin
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file_bam = joinpath(bamdir, "ce#5b.bam")
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records = open(collect, BAM.Reader, file_bam)
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reader = open(BAM.Reader, file_bam)
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record = BAM.Record()
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i = 0
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while !eof(reader)
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empty!(record) # Reset the record.
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read!(reader, record)
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i = i + 1
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@test records[i] == record
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end
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close(reader)
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end
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@testset "Random access" begin
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@testset "Random access" begin
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filepath = joinpath(bamdir, "GSE25840_GSM424320_GM06985_gencode_spliced.head.bam")
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filepath = joinpath(bamdir, "GSE25840_GSM424320_GM06985_gencode_spliced.head.bam")
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reader = open(BAM.Reader, filepath, index=filepath * ".bai")
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reader = open(BAM.Reader, filepath, index=filepath * ".bai")
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