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Pipe into eval

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This commit is contained in:
Ciarán O'Mara 2019-09-08 09:08:12 +10:00
parent e63ce2e398
commit 892ad0d7dc
1 changed files with 58 additions and 51 deletions
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109
src/sam/readrecord.jl
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@ -317,36 +317,39 @@ const sam_metainfo_actions = Dict(
end,
:anchor => :(),
:mark1 => :(mark1 = p),
:mark2 => :(mark2 = p))
eval(
generate_index_function(
MetaInfo,
sam_metainfo_machine,
:(mark1 = mark2 = offset = 0),
sam_metainfo_actions))
eval(
generate_readheader_function(
Reader,
MetaInfo,
sam_header_machine,
:(mark1 = mark2 = offset = 0),
merge(sam_metainfo_actions, Dict(
:metainfo => quote
resize_and_copy!(record.data, data, upanchor!(stream):p-1)
record.filled = (offset+1:p-1) .- offset
@assert isfilled(record)
push!(reader.header.metainfo, record)
ensure_margin!(stream)
record = MetaInfo()
end,
:header => :(finish_header = true; @escape),
:countline => :(linenum += 1),
:anchor => :(anchor!(stream, p); offset = p - 1))),
quote
if !eof(stream)
stream.position -= 1 # cancel look-ahead
end
end))
:mark2 => :(mark2 = p)
)
generate_index_function(
MetaInfo,
sam_metainfo_machine,
:(mark1 = mark2 = offset = 0),
sam_metainfo_actions
) |> eval
generate_readheader_function(
Reader,
MetaInfo,
sam_header_machine,
:(mark1 = mark2 = offset = 0),
merge(sam_metainfo_actions, Dict(
:metainfo => quote
resize_and_copy!(record.data, data, upanchor!(stream):p-1)
record.filled = (offset+1:p-1) .- offset
@assert isfilled(record)
push!(reader.header.metainfo, record)
ensure_margin!(stream)
record = MetaInfo()
end,
:header => :(finish_header = true; @escape),
:countline => :(linenum += 1),
:anchor => :(anchor!(stream, p); offset = p - 1))),
quote
if !eof(stream)
stream.position -= 1 # cancel look-ahead
end
end
) |> eval
const sam_record_actions = Dict(
:record_qname => :(record.qname = (mark:p-1) .- offset),
@ -366,24 +369,28 @@ const sam_record_actions = Dict(
record.filled = (offset+1:p-1) .- offset
end,
:anchor => :(),
:mark => :(mark = p))
eval(
generate_index_function(
Record,
sam_record_machine,
:(mark = offset = 0),
sam_record_actions))
eval(
generate_read_function(
Reader,
sam_body_machine,
:(mark = offset = 0),
merge(sam_record_actions, Dict(
:record => quote
resize_and_copy!(record.data, data, upanchor!(stream):p-1)
record.filled = (offset+1:p-1) .- offset
found_record = true
@escape
end,
:countline => :(linenum += 1),
:anchor => :(anchor!(stream, p); offset = p - 1)))))
:mark => :(mark = p)
)
generate_index_function(
Record,
sam_record_machine,
:(mark = offset = 0),
sam_record_actions
) |> eval
generate_read_function(
Reader,
sam_body_machine,
:(mark = offset = 0),
merge(sam_record_actions, Dict(
:record => quote
resize_and_copy!(record.data, data, upanchor!(stream):p-1)
record.filled = (offset+1:p-1) .- offset
found_record = true
@escape
end,
:countline => :(linenum += 1),
:anchor => :(anchor!(stream, p); offset = p - 1))
)
) |> eval