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Add tests for issue #31

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Test for expected results as described in https://github.com/BioJulia/XAM.jl/issues/31.
This commit is contained in:
Ciarán O'Mara 2022-08-15 12:30:27 +10:00
parent 7609f6e24d
commit 99aa013c2b
3 changed files with 15 additions and 0 deletions
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1
Project.toml
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@ -20,6 +20,7 @@ BGZFStreams = "0.3"
BioAlignments = "2"
BioGenerics = "0.1"
BioSequences = "2.0.4"
FormatSpecimens = "1.1"
GenomicFeatures = "2"
Indexes = "0.1"
TranscodingStreams = "0.6, 0.7, 0.8, 0.9"

1
test/runtests.jl
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@ -25,3 +25,4 @@ end
include("test_sam.jl")
include("test_bam.jl")
include("test_issues.jl")

13
test/test_issues.jl Normal file
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@ -0,0 +1,13 @@
@testset "Issues" begin
# https://github.com/BioJulia/XAM.jl/issues/31
path_bam = joinpath(path_of_format("BAM"), "SRR7993829_1.100K.forward.bam")
open(BAM.Reader, path_bam, index = path_bam * ".bai") do reader
@test count(overlap -> true, eachoverlap(reader, "JH584304.1", 51000:51200)) == 0
@test count(overlap -> true, eachoverlap(reader, "JH584304.1", 51000:51715)) == 1
end
end