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2 changed files with 7 additions and 4 deletions
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@ -12,7 +12,7 @@ function Reader(state::State{S}) where {S <: TranscodingStream}
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cs, ln = readheader!(rdr.state.stream, rdr.header, (sam_machine_header.start_state, rdr.state.linenum))
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rdr.state.state = sam_machine_body.start_state
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rdr.state.state = sam_machine_body.start_state # Get the reader ready to read the body.
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rdr.state.linenum = ln
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rdr.state.filled = false
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@ -2,10 +2,11 @@
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# ==========
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mutable struct Record
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# data and filled range
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# Data and filled range.
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data::Vector{UInt8}
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filled::UnitRange{Int}
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# indexes
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filled::UnitRange{Int} # Note: Specifies the data in use.
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# Mandatory fields.
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qname::UnitRange{Int}
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flag::UnitRange{Int}
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rname::UnitRange{Int}
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@ -17,6 +18,8 @@ mutable struct Record
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tlen::UnitRange{Int}
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seq::UnitRange{Int}
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qual::UnitRange{Int}
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# Auxiliary fields.
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fields::Vector{UnitRange{Int}}
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end
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