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Update tests to use new AlignmentAnchor structure

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This commit is contained in:
Thomas A. Christensen II 2022-10-10 08:51:36 -05:00
parent 9720fd0fcd
commit f7b9d9fa75
Signed by: millironx
GPG key ID: 139C07724802BC5D
2 changed files with 8 additions and 8 deletions
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8
test/test_bam.jl
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@ -79,10 +79,10 @@
@test BAM.flag(record) === UInt16(16) @test BAM.flag(record) === UInt16(16)
@test BAM.cigar(record) == "27M1D73M" @test BAM.cigar(record) == "27M1D73M"
@test BAM.alignment(record) == Alignment([ @test BAM.alignment(record) == Alignment([
AlignmentAnchor( 0, 1, OP_START), AlignmentAnchor( 0, 1, 0, OP_START),
AlignmentAnchor( 27, 28, OP_MATCH), AlignmentAnchor( 27, 28, 27, OP_MATCH),
AlignmentAnchor( 27, 29, OP_DELETE), AlignmentAnchor( 27, 29, 28, OP_DELETE),
AlignmentAnchor(100, 102, OP_MATCH)]) AlignmentAnchor(100, 102, 101, OP_MATCH)])
@test record["XG"] == 1 @test record["XG"] == 1
@test record["XM"] == 5 @test record["XM"] == 5
@test record["XN"] == 0 @test record["XN"] == 0

8
test/test_sam.jl
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@ -104,10 +104,10 @@
@test SAM.flag(record) == 16 @test SAM.flag(record) == 16
@test SAM.cigar(record) == "27M1D73M" @test SAM.cigar(record) == "27M1D73M"
@test SAM.alignment(record) == Alignment([ @test SAM.alignment(record) == Alignment([
AlignmentAnchor( 0, 1, OP_START), AlignmentAnchor( 0, 1, 0, OP_START),
AlignmentAnchor( 27, 28, OP_MATCH), AlignmentAnchor( 27, 28, 27, OP_MATCH),
AlignmentAnchor( 27, 29, OP_DELETE), AlignmentAnchor( 27, 29, 28, OP_DELETE),
AlignmentAnchor(100, 102, OP_MATCH)]) AlignmentAnchor(100, 102, 101, OP_MATCH)])
@test record["XG"] == 1 @test record["XG"] == 1
@test record["XM"] == 5 @test record["XM"] == 5
@test record["XN"] == 0 @test record["XN"] == 0