millironx/XAM.jl
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26 commits

Author SHA1 Message Date
Thomas A. Christensen II
9720fd0fcd
Bump BioAlignments version compat to 3 2022-10-10 16:24:25 -05:00
Thomas A. Christensen II
5cbf9dfb1c
Bump version number to 0.3.0 in Project.toml 2022-10-08 15:21:06 -05:00
Ciarán O'Mara
8424757cc2 Merge branch 'master' into develop 
# Conflicts:
#	Project.toml
#	test/runtests.jl
 2022-08-15 15:34:24 +10:00
Ciarán O'Mara
0cc0405ca0 Increment BGZFStreams compatibility 2022-08-15 12:30:29 +10:00
Ciarán O'Mara
99aa013c2b Add tests for issue #31 
Test for expected results as described in https://github.com/BioJulia/XAM.jl/issues/31.
 2022-08-15 12:30:27 +10:00
Ciarán O'Mara
7609f6e24d Increment version 2022-08-15 09:43:35 +10:00
Thomas A. Christensen II
03d8e5e745
Update minimum Julia version to 1.6 
BioSymbols v3 requires Julia 1.6+, so update the "julia" compat entry and
remove unit testing against Julia 1.0.
 2022-07-11 07:29:08 -05:00
Thomas A. Christensen II
e560681afa
Update BioAlignments to v2.2 and BioSequences to v3 
Ok, so this isn't atomic, but we can't upgrade these separately.
 2022-07-07 09:22:15 -05:00
Ciarán O’Mara
c56eb0851a Update Continuous Integration workflows 
- Includes doctest in tests.
 2021-06-29 13:23:00 +10:00
Ciarán O’Mara
aaf3710fbe Increment version 2021-03-27 00:28:44 +11:00
Ciarán O'Mara
eb11106b01 Increment version 2020-07-08 11:03:10 +10:00
Ciarán O'Mara
bde477d54f Increment version 2020-06-22 10:35:34 +10:00
Ciarán O'Mara
6141d679e8 Use copyto! 
https://github.com/BioJulia/BioSequences.jl/pull/95
 2020-06-22 10:30:51 +10:00
Ciarán O'Mara
eaf5c73eb5 Update CI and documentation for the general registry 
- Update documentation workflow.
- Update CompatHelper workflow.
- Update TagBot workflow.
- Update unit test workflow.
- Update codecov.
 2020-06-20 23:31:02 +10:00
Ciarán O'Mara
cc18311539 Increment version 2020-05-22 12:12:37 +10:00
Ciarán O'Mara
bb13a38cf7 Increment version 2020-04-17 15:49:24 +10:00
Ciarán O'Mara
89d7e94f77 Increment version 2020-04-12 17:23:31 +10:00
Ciarán O'Mara
031751f6b3 Increment version 2020-03-21 00:41:24 +11:00
Ciarán O'Mara
8702799593 Increment version 2020-03-16 21:59:40 +11:00
Ciarán O'Mara
de56faf066 Migrate from BufferedStreams to TranscodingStreams 2020-03-13 23:01:25 +11:00
Ciarán O'Mara
c4f3c4b0df Migrate to BioGenerics 
Basic find and replace.
 2020-03-13 23:01:25 +11:00
Ciarán O'Mara
6f03bef623 Increment version 2020-03-13 20:41:06 +11:00
Ciarán O'Mara
2df146b8fc Use FormatSpecimens 2020-02-26 10:28:39 +11:00
Ciarán O'Mara
1a3c986152 Minimal code adjustments for working separation 
- Update to use GenomicFeatures v2.
- BioAlignments v2.
- BioSequences v2.
- Indexes v0.1.
 2020-02-20 21:19:07 +11:00
Ciarán O'Mara
17ea000940 Add original authors 2020-02-02 20:05:04 +11:00
Ciarán O'Mara
07c0f925e6 Generated files 2020-01-17 16:34:47 +11:00