mirror of https://github.com/MillironX/XAM.jl
You cannot select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
29 lines
577 B
Julia
29 lines
577 B
Julia
# BAM File Format
|
|
# ===============
|
|
|
|
module BAM
|
|
|
|
using BioGenerics
|
|
using GenomicFeatures
|
|
using XAM.SAM
|
|
import ..XAM: flag, XAMRecord, XAMReader, XAMWriter,
|
|
ismapped, isprimary, ispositivestrand, isnextmapped #TODO: Deprecate import of flag queries. These were imported to preseve existing API.
|
|
|
|
import BGZFStreams
|
|
import BioAlignments
|
|
import Indexes
|
|
import BioSequences
|
|
import BioGenerics: isfilled, header
|
|
|
|
import GenomicFeatures: eachoverlap
|
|
|
|
|
|
include("bai.jl")
|
|
include("auxdata.jl")
|
|
include("reader.jl")
|
|
include("record.jl")
|
|
include("writer.jl")
|
|
include("overlap.jl")
|
|
|
|
end
|