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35 lines
734 B
Julia
35 lines
734 B
Julia
using Test
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using Documenter
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using BioGenerics
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using FormatSpecimens
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using GenomicFeatures
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using XAM
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import BioAlignments: Alignment, AlignmentAnchor, OP_START, OP_MATCH, OP_DELETE
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import BGZFStreams: BGZFStream
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import BioGenerics.Exceptions: MissingFieldException
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import BioSequences: @dna_str, @aa_str
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# Generate a random range within `range`.
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function randrange(range)
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x = rand(range)
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y = rand(range)
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if x < y
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return x:y
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else
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return y:x
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end
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end
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@testset "XAM" begin
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include("test_sam.jl")
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include("test_bam.jl")
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include("test_crosscheck.jl")
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# Include doctests.
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DocMeta.setdocmeta!(XAM, :DocTestSetup, :(using XAM); recursive=true)
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doctest(XAM; manual = false)
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end
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