mirror of
https://github.com/MillironX/XAM.jl.git
synced 2024-11-23 10:19:56 +00:00
69 lines
4.8 KiB
Markdown
69 lines
4.8 KiB
Markdown
# <img src="./docs/src/assets/logo.svg" width="30%" align="right" /> XAM.jl
|
||
|
||
[](https://www.repostatus.org/#active)
|
||
[](https://github.com/BioJulia/XAM.jl/releases/latest)
|
||
[](https://github.com/BioJulia/XAM.jl/blob/master/LICENSE)
|
||
[](https://biojulia.github.io/XAM.jl/stable)
|
||
[](https://biojulia.github.io/XAM.jl/dev/)
|
||
[](https://gitter.im/BioJulia/XAM.jl)
|
||
|
||
> This project follows the [semver](http://semver.org) pro forma and uses the [git-flow branching model](https://nvie.com/posts/a-successful-git-branching-model/ "original
|
||
blog post").
|
||
|
||
## Description
|
||
The XAM package provides I/O and utilities for manipulating SAM and BAM formatted alignment map files.
|
||
|
||
## Installation
|
||
You can install the XAM package from the [Julia REPL](https://docs.julialang.org/en/v1/manual/getting-started/).
|
||
Press `]` to enter [pkg mode](https://docs.julialang.org/en/v1/stdlib/Pkg/), then enter the following command:
|
||
```julia
|
||
add XAM
|
||
```
|
||
|
||
If you are interested in the cutting edge of the development, please check out the [develop branch](https://github.com/BioJulia/XAM.jl/tree/develop) to try new features before release.
|
||
|
||
## Testing
|
||
XAM is tested against Julia `1.X` on Linux, OS X, and Windows.
|
||
|
||
**Latest build status:**
|
||
|
||
[](https://github.com/BioJulia/XAM.jl/actions?query=workflow%3A%22Unit+tests%22+branch%3Amaster)
|
||
[](https://github.com/BioJulia/XAM.jl/actions?query=workflow%3ADocumentation+branch%3Amaster)
|
||
[](https://codecov.io/gh/BioJulia/XAM.jl)
|
||
|
||
## Contributing
|
||
We appreciate [contributions](https://github.com/BioJulia/XAM.jl/graphs/contributors) from users including reporting bugs, fixing issues, improving performance and adding new features.
|
||
|
||
Take a look at the [contributing files](https://github.com/BioJulia/Contributing) detailed contributor and maintainer guidelines, and code of conduct.
|
||
|
||
### Financial contributions
|
||
We also welcome financial contributions in full transparency on our [open collective](https://opencollective.com/biojulia).
|
||
Anyone can file an expense.
|
||
If the expense makes sense for the development the core contributors and the person who filed the expense will be reimbursed.
|
||
|
||
|
||
## Backers & Sponsors
|
||
Thank you to all our backers and sponsors!
|
||
|
||
Love our work and community? [Become a backer](https://opencollective.com/biojulia#backer).
|
||
|
||
[](https://opencollective.com/biojulia#backers)
|
||
|
||
Does your company use BioJulia?
|
||
Help keep BioJulia feature rich and healthy by [sponsoring the project](https://opencollective.com/biojulia#sponsor).
|
||
Your logo will show up here with a link to your website.
|
||
|
||
[](https://opencollective.com/biojulia/sponsor/0/website)
|
||
[](https://opencollective.com/biojulia/sponsor/1/website)
|
||
[](https://opencollective.com/biojulia/sponsor/2/website)
|
||
[](https://opencollective.com/biojulia/sponsor/3/website)
|
||
[](https://opencollective.com/biojulia/sponsor/4/website)
|
||
[](https://opencollective.com/biojulia/sponsor/5/website)
|
||
[](https://opencollective.com/biojulia/sponsor/6/website)
|
||
[](https://opencollective.com/biojulia/sponsor/7/website)
|
||
[](https://opencollective.com/biojulia/sponsor/8/website)
|
||
[](https://opencollective.com/biojulia/sponsor/9/website)
|
||
|
||
|
||
## Questions?
|
||
If you have a question about contributing or using BioJulia software, come on over and chat to us on [the Julia Slack workspace](https://julialang.org/slack/), or you can try the [Bio category of the Julia discourse site](https://discourse.julialang.org/c/domain/bio).
|