refactor: Compile everything into a single report file

main.jl

@@ -120,23 +120,31 @@ open("results.json", "w") do io
     JSON3.write(io, question_dict)
 end
 
+open("results.md", "w") do f
+    write(f, "# Antimicrobial usage survey open-ended questions\n\n")
 
-# Compile comments from all requested questions
-for q in questions
-    open("$q.md", "w") do f
-        write(f, "# Antimicrobial usage survey open-ended question: $q\n\n")
-        for (i, a) in enumerate(skipmissing(survey_data[!, q]))
-            if i == 1
-                write(f, "**$a**\n\n")
-            else
-                write(f, "$a\n\n")
+    for (question, answers) in question_dict
+        write(f, "## $(question): $(first(survey_data[!, question]))\n\n")
+
+        for (answer, themes) in answers
+            write(f, "$answer\n\n    Themes:\n")
+
+            for (theme, is_answered) in themes
+                if ismissing(is_answered)
+                    write(f, "        - $theme?\n")
+                elseif is_answered
+                    write(f, "        - $theme\n")
                 end #if
-        end #for
-    end #do
 
-    run(`pandoc $q.md -o $q.docx`)
+            end #for (theme)
+            write(f, "\n\n---\n\n")
+        end #for (answer)
+        write(f, "\n\n")
+    end #for (question)
+    write(f, "\n\n")
+end #do
 
-end #for
+run(`pandoc results.md -o results.docx`)
 
 # Close log file
 close(log_io)