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@ -58,6 +58,9 @@ function beefblup(path::String, savepath::String, h2::Float64)
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# Import data from a suitable spreadsheet
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data = DataFrame(CSV.File(path))
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# Make sure the data is in the proper format
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renamecolstospec!(data)
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# Sort the array by date
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sort!(data, :birthdate)
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@ -293,5 +296,23 @@ function additiverelationshipmatrix(id::AbstractVector, damid::AbstractVector, s
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return A
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end
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"""
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renamecolstospec(::DataFrame)
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Renames the first four columns of the beefblup data sheet so that they can be referred to by
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name instead of by column index, regardless of user input.
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"""
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function renamecolstospec!(df::DataFrame)
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# Pull out the fixed-effect and observation name
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othernames = propertynames(df)[5:end]
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# Put specification column names and user-defined names together
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allnames = cat([:id, :birthdate, :dam, :sire], othernames, dims=1)
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# Rename in the DataFrame
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rename!(df, allnames, makeunique=true)
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return df
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end
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end
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