From fe8a4d9a8a6891bccf1d097ed14e7812c75eb3eb Mon Sep 17 00:00:00 2001 From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com> Date: Mon, 10 Sep 2018 17:05:30 -0600 Subject: [PATCH] Updated readme --- README.md | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/README.md b/README.md index 148f3d2..aedbed1 100644 --- a/README.md +++ b/README.md @@ -1 +1,36 @@ # beefblup + +MATLAB and Python scripts and Excel spreadsheets that can be used in conjunction to find breeding values for beef cattle. + +## How to Use + +*Notice: this project is currently in development, these instuctions are to guide development efforts toward an intended operation procedure* + +1. Choose a spreadsheet appropriate to the trait you want to analyse from the `Excel` folder, and save it to your hard drive +2. Place your data into the structure described by the spreadsheet +3. If you wish to add more contemporary group traits to your analysis, add them into or directly after the Purple section +4. Download the entire `MATLAB` folder, and set it as your current MATLAB directory +5. Run `beefblup.m` +6. Select the spreadsheet file you just placed your data into +7. Select a file that you would like to save your results to +8. Breeding values and contemporary group adjustments will be outputted to the file you selected + +## Contributing + +I will not accept any contributions while writing the initial MATLAB script. Once that is finished, I will gladly take input on the following: + +* Converting MATLAB scripts to Python +* Optimizing code sections +* Adding spreadsheets for additional traits +* Bug reports, usability issues, etc. + +If you are writing code, please keep the code clean by: + +* Indenting using the native editor's formating +* Naming variables in full word English using camelCase, unless the matrix name is generally agreed upon in papers (i.e. A is the additive relationship matrix) +* For MATLAB, functions go in a separate file +* Comments go before a code block: no inline comments + +## License + +Distributed under the 3-Clause BSD License \ No newline at end of file