From bbc3f91d560cdc059a92e9d44c90d18e38e80cf8 Mon Sep 17 00:00:00 2001 From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com> Date: Wed, 21 Apr 2021 12:34:59 -0600 Subject: [PATCH] Correct rarefaction instructions in README --- README.md | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 5501fff..0fdefba 100644 --- a/README.md +++ b/README.md @@ -37,9 +37,8 @@ git clone https://github.com/MillironX/cowcalf-rumen-metagenomic-pipeline.git Create a directory with all forward- and reverse- read files in it, named as `_R1_001.fastq.gz` for forward-reads and `_R2_001.fastq.gz` for reverse-reads. Add a [QIIME2-compatible metadata file][qiime2-metadata] -named `metadata.tsv`, text files containing the minimum and maximum rarefaction -values names `rarefaction.min.txt` and `rarefaction.max.txt` and copy all of the -code files into it. It should look like +named `metadata.tsv`, and copy all of the code files into it. It should look +like ```plaintext . @@ -51,8 +50,6 @@ code files into it. It should look like ├── sampleN_R1_001.fastq.gz ├── sampleN_R2_001.fastq.gz ├── metadata.tsv -├── rarefaction.min.txt -├── rarefaction.max.txt ├── main.sh ├── fastq-to-taxonomy.sh ├── manipulatefeaturetable.R