mirror of
https://github.com/MillironX/docker-BioJulia.git
synced 2024-11-23 07:09:56 +00:00
[⚡ AUTOMATED]: Pkg upgrade for 2024-08-16
Files changed:\nM Manifest.toml
This commit is contained in:
parent
08d2c780d5
commit
27ffac843f
1 changed files with 83 additions and 65 deletions
148
Manifest.toml
148
Manifest.toml
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@ -289,45 +289,45 @@ version = "0.14.4"
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[[CodeTracking]]
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deps = ["InteractiveUtils", "UUIDs"]
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git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386"
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||||
git-tree-sha1 = "7eee164f122511d3e4e1ebadb7956939ea7e1c77"
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||||
uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2"
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version = "1.3.5"
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version = "1.3.6"
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||||
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[[CodecBase]]
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||||
deps = ["TranscodingStreams"]
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||||
git-tree-sha1 = "862a544811905a16dead4196edc07b841dc1c900"
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||||
git-tree-sha1 = "40956acdbef3d8c7cc38cba42b56034af8f8581a"
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||||
uuid = "6c391c72-fb7b-5838-ba82-7cfb1bcfecbf"
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version = "0.3.3"
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version = "0.3.4"
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||||
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||||
[[CodecBzip2]]
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deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"]
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git-tree-sha1 = "f8889d1770addf59d0a015c49a473fa2bdb9f809"
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deps = ["Bzip2_jll", "TranscodingStreams"]
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||||
git-tree-sha1 = "e7c529cc31bb85b97631b922fa2e6baf246f5905"
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uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
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version = "0.8.3"
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version = "0.8.4"
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[[CodecLz4]]
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deps = ["Lz4_jll", "TranscodingStreams"]
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git-tree-sha1 = "42494e2756fe6f775d6da57aac6762d2e11a95ce"
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git-tree-sha1 = "0db0c70ca94c0a79cadad269497f25ca88b9fa91"
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||||
uuid = "5ba52731-8f18-5e0d-9241-30f10d1ec561"
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version = "0.4.4"
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version = "0.4.5"
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[[CodecXz]]
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deps = ["Libdl", "TranscodingStreams", "XZ_jll"]
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git-tree-sha1 = "d569c8b7e0f0cdc418286a2001a058883dbe30ad"
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deps = ["TranscodingStreams", "XZ_jll"]
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git-tree-sha1 = "47cee2085962dad41ca9ec811e37694d7445531f"
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uuid = "ba30903b-d9e8-5048-a5ec-d1f5b0d4b47b"
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version = "0.7.3"
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version = "0.7.4"
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[[CodecZlib]]
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deps = ["TranscodingStreams", "Zlib_jll"]
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git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8"
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git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759"
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uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
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version = "0.7.5"
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version = "0.7.6"
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[[CodecZstd]]
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deps = ["TranscodingStreams", "Zstd_jll"]
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git-tree-sha1 = "ed0be9a9c1a6b6dec7aac15f8977f16ad6a9796c"
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git-tree-sha1 = "5e41a52bec3b0881a7eb54f5391b779994504186"
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uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2"
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version = "0.8.4"
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version = "0.8.5"
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[[ColorBrewer]]
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deps = ["Colors", "JSON", "Test"]
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@ -377,9 +377,9 @@ version = "0.3.0"
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[[Compat]]
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deps = ["Dates", "LinearAlgebra", "TOML", "UUIDs"]
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git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248"
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git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215"
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uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
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version = "4.15.0"
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version = "4.16.0"
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[[CompilerSupportLibraries_jll]]
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deps = ["Artifacts", "Libdl"]
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@ -471,6 +471,12 @@ version = "1.0.0"
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deps = ["Printf"]
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uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
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[[Dbus_jll]]
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deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"]
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git-tree-sha1 = "fc173b380865f70627d7dd1190dc2fce6cc105af"
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uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab"
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version = "1.14.10+0"
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[[Debugger]]
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deps = ["CodeTracking", "Crayons", "Highlights", "InteractiveUtils", "JuliaInterpreter", "Markdown", "REPL"]
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git-tree-sha1 = "058d715709c76658d3936074157921643a3041bd"
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@ -553,9 +559,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
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[[Distributions]]
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deps = ["AliasTables", "ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
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git-tree-sha1 = "9c405847cc7ecda2dc921ccf18b47ca150d7317e"
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git-tree-sha1 = "0e0a1264b0942f1f3abb2b30891f2a590cc652ac"
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uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
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version = "0.25.109"
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version = "0.25.110"
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[[DocStringExtensions]]
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deps = ["LibGit2"]
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@ -567,12 +573,6 @@ version = "0.9.3"
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deps = ["ArgTools", "LibCURL", "NetworkOptions"]
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uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
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[[DualNumbers]]
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deps = ["Calculus", "NaNMath", "SpecialFunctions"]
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git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
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uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
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version = "0.6.8"
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[[EnumX]]
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git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237"
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uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
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@ -757,10 +757,10 @@ deps = ["Random"]
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uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
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[[GLFW_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]
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git-tree-sha1 = "3f74912a156096bd8fdbef211eff66ab446e7297"
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"]
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git-tree-sha1 = "532f9126ad901533af1d4f5c198867227a7bb077"
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uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89"
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version = "3.4.0+0"
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version = "3.4.0+1"
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[[GLM]]
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deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"]
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@ -910,10 +910,10 @@ uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0"
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version = "0.1.17"
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[[HypergeometricFunctions]]
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deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
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git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685"
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deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
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git-tree-sha1 = "7c4195be1649ae622304031ed46a2f4df989f1eb"
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uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
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version = "0.3.23"
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version = "0.3.24"
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[[HypothesisTests]]
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deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Printf", "Random", "Rmath", "Roots", "Statistics", "StatsAPI", "StatsBase"]
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@ -1131,9 +1131,9 @@ version = "1.1.0"
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[[InverseFunctions]]
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deps = ["Dates", "Test"]
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git-tree-sha1 = "18c59411ece4838b18cd7f537e56cf5e41ce5bfd"
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git-tree-sha1 = "2787db24f4e03daf859c6509ff87764e4182f7d1"
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uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
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version = "0.1.15"
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version = "0.1.16"
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[[InvertedIndices]]
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git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
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@ -1217,9 +1217,9 @@ version = "3.0.3+0"
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[[JuliaInterpreter]]
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deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
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git-tree-sha1 = "5d3a5a206297af3868151bb4a2cf27ebce46f16d"
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git-tree-sha1 = "7ae67d8567853d367e3463719356b8989e236069"
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uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
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version = "0.9.33"
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version = "0.9.34"
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[[JuliaWebAPI]]
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deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"]
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@ -1289,9 +1289,9 @@ version = "0.0.23+0"
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[[LLVMOpenMP_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713"
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git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626"
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uuid = "1d63c593-3942-5779-bab2-d838dc0a180e"
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version = "15.0.7+0"
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version = "17.0.6+0"
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[[LZO_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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@ -1424,9 +1424,9 @@ version = "0.9.1"
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[[LineSearches]]
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deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"]
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git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d"
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git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1"
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uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255"
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version = "7.2.0"
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version = "7.3.0"
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[[LinearAlgebra]]
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deps = ["Libdl"]
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@ -1489,6 +1489,12 @@ git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df"
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uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
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version = "0.5.13"
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[[MakieCore]]
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deps = ["Observables", "REPL"]
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git-tree-sha1 = "9b11acd07f21c4d035bd4156e789532e8ee2cc70"
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uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
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version = "0.6.9"
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[[ManualMemory]]
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git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
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uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667"
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@ -1511,9 +1517,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
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[[MathOptInterface]]
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deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
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git-tree-sha1 = "91b08d27a27d83cf1e63e50837403e7f53a0fd74"
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git-tree-sha1 = "c0fe113e9c72aa0c9a185fd3c5ca1daa51de1486"
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uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
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version = "1.31.0"
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version = "1.31.1"
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[[MbedTLS]]
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deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
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@ -1579,15 +1585,15 @@ version = "0.9.0"
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[[Mustache]]
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deps = ["Printf", "Tables"]
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git-tree-sha1 = "a7cefa21a2ff993bff0456bf7521f46fc077ddf1"
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git-tree-sha1 = "3b2db451a872b20519ebb0cec759d3d81a1c6bcb"
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uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70"
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version = "1.0.19"
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version = "1.0.20"
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[[MutableArithmetics]]
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deps = ["LinearAlgebra", "SparseArrays", "Test"]
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git-tree-sha1 = "898c56fbf8bf71afb0c02146ef26f3a454e88873"
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git-tree-sha1 = "d0a6b1096b584a2b88efb70a92f8cb8c881eb38a"
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uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
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version = "1.4.5"
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version = "1.4.6"
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|
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[[MyterialColors]]
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git-tree-sha1 = "01d8466fb449436348999d7c6ad740f8f853a579"
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@ -1607,10 +1613,10 @@ uuid = "76087f3c-5699-56af-9a33-bf431cd00edd"
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version = "1.0.2"
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[[NLopt_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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git-tree-sha1 = "9b1f15a08f9d00cdb2761dcfa6f453f5d0d6f973"
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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git-tree-sha1 = "3d1eefa627faeabc59ab9edbf00d17f70123ad69"
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uuid = "079eb43e-fd8e-5478-9966-2cf3e3edb778"
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version = "2.7.1+0"
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version = "2.8.0+0"
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[[NLsolve]]
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deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"]
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@ -1787,6 +1793,12 @@ git-tree-sha1 = "0fac6313486baae819364c52b4f483450a9d793f"
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uuid = "5432bcbf-9aad-5242-b902-cca2824c8663"
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version = "0.5.12"
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[[Pango_jll]]
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deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"]
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git-tree-sha1 = "cb5a2ab6763464ae0f19c86c56c63d4a2b0f5bda"
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uuid = "36c8627f-9965-5494-a995-c6b170f724f3"
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version = "1.52.2+0"
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[[Parameters]]
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deps = ["OrderedCollections", "UnPack"]
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git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe"
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@ -1857,10 +1869,10 @@ uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab"
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version = "0.4.4"
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[[Polyester]]
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deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"]
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git-tree-sha1 = "9ff799e8fb8ed6717710feee3be3bc20645daa97"
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deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"]
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git-tree-sha1 = "6d38fea02d983051776a856b7df75b30cf9a3c1f"
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uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
|
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version = "0.7.15"
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version = "0.7.16"
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[[PolyesterWeave]]
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deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
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@ -1869,10 +1881,10 @@ uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad"
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version = "0.2.2"
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[[Polynomials]]
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deps = ["LinearAlgebra", "RecipesBase"]
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git-tree-sha1 = "a14a99e430e42a105c898fcc7f212334bc7be887"
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||||
deps = ["ChainRulesCore", "LinearAlgebra", "MakieCore", "MutableArithmetics", "RecipesBase"]
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git-tree-sha1 = "3aa2bb4982e575acd7583f01531f241af077b163"
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uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45"
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version = "3.2.4"
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version = "3.2.13"
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[[PooledArrays]]
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deps = ["DataAPI", "Future"]
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@ -2010,10 +2022,10 @@ uuid = "74087812-796a-5b5d-8853-05524746bad3"
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version = "1.6.2"
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[[RandomNumbers]]
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deps = ["Random", "Requires"]
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git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111"
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deps = ["Random"]
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git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902"
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uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
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version = "1.5.3"
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version = "1.6.0"
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[[RangeArrays]]
|
||||
git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5"
|
||||
|
@ -2093,9 +2105,9 @@ version = "0.7.1"
|
|||
|
||||
[[Rmath_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21"
|
||||
git-tree-sha1 = "e60724fd3beea548353984dc61c943ecddb0e29a"
|
||||
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
|
||||
version = "0.4.2+0"
|
||||
version = "0.4.3+0"
|
||||
|
||||
[[Roots]]
|
||||
deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"]
|
||||
|
@ -2286,10 +2298,10 @@ uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
|
|||
version = "0.8.9"
|
||||
|
||||
[[StaticArrayInterface]]
|
||||
deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"]
|
||||
git-tree-sha1 = "8963e5a083c837531298fc41599182a759a87a6d"
|
||||
deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "Static"]
|
||||
git-tree-sha1 = "c3668ff1a3e4ddf374fc4f8c25539ce7194dcc39"
|
||||
uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718"
|
||||
version = "1.5.1"
|
||||
version = "1.6.0"
|
||||
|
||||
[[StaticArrays]]
|
||||
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore", "Statistics"]
|
||||
|
@ -2819,9 +2831,9 @@ version = "0.4.12"
|
|||
|
||||
[[ZMQ]]
|
||||
deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"]
|
||||
git-tree-sha1 = "ad6944a6b3dfd8e95920e48355d3baf510319262"
|
||||
git-tree-sha1 = "18cfd00df3cbbebf8ea4ec7ea6bbceb3af716bd0"
|
||||
uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1"
|
||||
version = "1.2.6"
|
||||
version = "1.3.0"
|
||||
|
||||
[[ZeroMQ_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"]
|
||||
|
@ -2875,6 +2887,12 @@ git-tree-sha1 = "576c27f2c23add3ce8f10717d72fbaee6fe120e9"
|
|||
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
|
||||
version = "3.1.0+2"
|
||||
|
||||
[[libdecor_jll]]
|
||||
deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"]
|
||||
git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f"
|
||||
uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f"
|
||||
version = "0.2.2+0"
|
||||
|
||||
[[libfdk_aac_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||
git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55"
|
||||
|
|
Loading…
Reference in a new issue