From 2ff41929765081f35a6327db8f7094c0ca00f856 Mon Sep 17 00:00:00 2001 From: MillironX Date: Mon, 16 Jan 2023 02:03:32 +0000 Subject: [PATCH] =?UTF-8?q?[=E2=9A=A1=20AUTOMATED]:=20Pkg=20upgrade=20for?= =?UTF-8?q?=202023-01-16?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Files changed:\nM Manifest.toml --- Manifest.toml | 205 +++++++++++++++++++++++++++----------------------- 1 file changed, 112 insertions(+), 93 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 205ca93..3f7c673 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -165,9 +165,9 @@ version = "0.5.10" [[BioAlignments]] deps = ["BioGenerics", "BioSequences", "BioSymbols", "IntervalTrees", "LinearAlgebra"] -git-tree-sha1 = "707e7e02cfb91a2b09e8f89df0204603b026df88" +git-tree-sha1 = "6a0c6a01af5bfdbbcb7679c51026da0fc7304d6e" uuid = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e" -version = "3.0.0" +version = "3.1.0" [[BioCore]] deps = ["Automa", "BufferedStreams", "YAML"] @@ -235,9 +235,9 @@ version = "0.4.2" [[CPUSummary]] deps = ["CpuId", "IfElse", "Static"] -git-tree-sha1 = "a7157ab6bcda173f533db4c93fc8a27a48843757" +git-tree-sha1 = "5b735f654bdfd7b6c18c49f1d3ebff34b4b8af43" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.1.30" +version = "0.2.1" [[CSSUtil]] deps = ["Colors", "JSON", "Markdown", "Measures", "WebIO"] @@ -247,9 +247,9 @@ version = "0.1.1" [[CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "SnoopPrecompile", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "8c73e96bd6817c2597cfd5615b91fca5deccf1af" +git-tree-sha1 = "c700cce799b51c9045473de751e9319bdd1c6e94" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.8" +version = "0.10.9" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -271,9 +271,9 @@ version = "0.2.2" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "99a39b0f807499510e2ea14b0eef8422082aa372" +git-tree-sha1 = "c46adabdd0348f0ee8de91142cfc4a72a613ac0a" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.46.0" +version = "1.46.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -361,9 +361,9 @@ version = "0.11.4" [[ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"] -git-tree-sha1 = "d08c20eef1f2cbc6e60fd3612ac4340b89fea322" +git-tree-sha1 = "600cc5508d66b78aae350f7accdb58763ac18589" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.9.9" +version = "0.9.10" [[Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] @@ -482,15 +482,15 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[Debugger]] deps = ["CodeTracking", "Crayons", "Highlights", "InteractiveUtils", "JuliaInterpreter", "Markdown", "REPL"] -git-tree-sha1 = "fad0af996889f2e7848093c33b1843bee9499fdd" +git-tree-sha1 = "6798d210d8277b96cee6a6af387ed249b6e744ab" uuid = "31a5f54b-26ea-5ae9-a837-f05ce5417438" -version = "0.7.7" +version = "0.7.8" [[DecisionTree]] deps = ["AbstractTrees", "DelimitedFiles", "LinearAlgebra", "Random", "ScikitLearnBase", "Statistics"] -git-tree-sha1 = "cbf727a9d5fb18c73dc0cbd21a9c696540bf56ae" +git-tree-sha1 = "e2ecf1b03f092251e0934c34fa579e37e5819ed1" uuid = "7806a523-6efd-50cb-b5f6-3fa6f1930dbb" -version = "0.12.1" +version = "0.12.2" [[DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "UnPack"] @@ -509,10 +509,10 @@ uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" version = "0.4.0" [[DiffEqBase]] -deps = ["ArrayInterfaceCore", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "MuladdMacro", "Parameters", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "Static", "StaticArrays", "Statistics", "Tricks", "ZygoteRules"] -git-tree-sha1 = "65805bb205e8d011fc91da87d41d14394db5d791" +deps = ["ArrayInterfaceCore", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "Static", "StaticArrays", "Statistics", "Tricks", "ZygoteRules"] +git-tree-sha1 = "b410f0b8a52752e1c1723b4316382203f914672c" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.108.0" +version = "6.113.1" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"] @@ -522,9 +522,9 @@ version = "2.24.3" [[DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArrays", "Statistics"] -git-tree-sha1 = "27350a71ca46c85a0bcdf7dca3b966f218c08f9a" +git-tree-sha1 = "1a5c145ea1915b92e0d446c05e375f9c69c0348d" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.15.0" +version = "5.15.2" [[DiffResults]] deps = ["StaticArraysCore"] @@ -562,9 +562,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "a7756d098cbabec6b3ac44f369f74915e8cfd70a" +git-tree-sha1 = "74911ad88921455c6afcad1eefa12bd7b1724631" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.79" +version = "0.25.80" [[DocStringExtensions]] deps = ["LibGit2"] @@ -648,9 +648,9 @@ version = "3.3.10+0" [[FastBroadcast]] deps = ["ArrayInterface", "ArrayInterfaceCore", "LinearAlgebra", "Polyester", "Static", "StrideArraysCore"] -git-tree-sha1 = "24db26ecc4c8a00584672d3b4c6cb0bb3dad9d51" +git-tree-sha1 = "4bef892787c972913d4d84e7255400759bb650e5" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.3" +version = "0.2.4" [[FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -783,15 +783,15 @@ version = "0.1.2" [[GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "bcc737c4c3afc86f3bbc55eb1b9fabcee4ff2d81" +git-tree-sha1 = "387d2b8b3ca57b791633f0993b31d8cb43ea3292" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.71.2" +version = "0.71.3" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "64ef06fa8f814ff0d09ac31454f784c488e22b29" +git-tree-sha1 = "5982b5e20f97bff955e9a2343a14da96a746cd8c" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.71.2+0" +version = "0.71.3+0" [[GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -1197,9 +1197,9 @@ version = "0.6.3" [[JumpProcesses]] deps = ["ArrayInterfaceCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] -git-tree-sha1 = "2cc453fad790410a40a6efe38e46c9c5a9c6fa41" +git-tree-sha1 = "09ed2720b2e343e48780a3156c4a6cef8dd54192" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.2.3" +version = "9.3.1" [[KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -1274,9 +1274,9 @@ version = "1.3.0" [[Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "ab9aa169d2160129beb241cb2750ca499b4e90e9" +git-tree-sha1 = "2422f47b34d4b127720a18f86fa7b1aa2e141f29" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.15.17" +version = "0.15.18" [[LayoutPointers]] deps = ["ArrayInterface", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static"] @@ -1396,9 +1396,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[LinearSolve]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "fb818ddfb0a6243f45bc99de2c9636b8f16381ea" +git-tree-sha1 = "cf1227e369513687658476e466a5b73a7c3dfa1f" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "1.32.2" +version = "1.33.0" [[LittleCMS_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg"] @@ -1417,9 +1417,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[LoopVectorization]] deps = ["ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "0897c2d2138f090064559a3d90b12b8725d118c2" +git-tree-sha1 = "155132d68bc33c826dbdeb452c5d0a79e2d0e586" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.143" +version = "0.12.146" [[Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1473,9 +1473,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "f21d9bb78cea58d9b535b9d9f2a1e601112ef0ed" +git-tree-sha1 = "baa31c7b235492d9a6f2cb31bb533d74345b0614" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.11.2" +version = "1.11.4" [[MathProgBase]] deps = ["LinearAlgebra", "SparseArrays"] @@ -1500,9 +1500,9 @@ version = "0.3.2" [[MetaGraphs]] deps = ["Graphs", "JLD2", "Random"] -git-tree-sha1 = "2af69ff3c024d13bde52b34a2a7d6887d4e7b438" +git-tree-sha1 = "1130dbe1d5276cb656f6e1094ce97466ed700e5a" uuid = "626554b9-1ddb-594c-aa3c-2596fe9399a5" -version = "0.7.1" +version = "0.7.2" [[Missings]] deps = ["DataAPI"] @@ -1625,6 +1625,12 @@ version = "3.7.2+0" [[NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +[[NonlinearSolve]] +deps = ["ArrayInterfaceCore", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "7142ca5ab9bd7452cafb29f7d51f574a09d69052" +uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" +version = "1.1.1" + [[Observables]] git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" @@ -1710,10 +1716,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.4.1" [[OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceGPUArrays", "ArrayInterfaceStaticArrays", "ArrayInterfaceStaticArraysCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "3e6e80272ae0525281e0531e766359891846a494" +deps = ["Adapt", "ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceGPUArrays", "ArrayInterfaceStaticArrays", "ArrayInterfaceStaticArraysCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "ca0c8939dbd3617ae3fdca13374d0b7501a2dd28" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.33.3" +version = "6.37.0" [[PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1757,9 +1763,9 @@ version = "2.1.1" [[Parsers]] deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "6466e524967496866901a78fca3f2e9ea445a559" +git-tree-sha1 = "8175fc2b118a3755113c8e68084dc1a9e63c61ee" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.2" +version = "2.5.3" [[Pidfile]] deps = ["FileWatching", "Test"] @@ -1802,9 +1808,9 @@ version = "1.3.2" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "513084afca53c9af3491c94224997768b9af37e8" +git-tree-sha1 = "a99bbd3664bb12a775cda2eba7f3b2facf3dad94" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.0" +version = "1.38.2" [[PoissonRandom]] deps = ["Random"] @@ -1814,21 +1820,21 @@ version = "0.4.3" [[Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "a5071cd52fc3fc0a960b825ddeb64e352fdf41e1" +git-tree-sha1 = "7f8dd47630b265df9e1d117137ee1894b195e032" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.6.20" +version = "0.7.1" [[PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "050ca4aa2ca31484b51b849d8180caf8e4449c49" +git-tree-sha1 = "5d0a598c95f67ee0787723e38745cb954d143684" uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.1.11" +version = "0.2.0" [[Polynomials]] deps = ["LinearAlgebra", "RecipesBase"] -git-tree-sha1 = "3010a6dd6ad4c7384d2f38c58fa8172797d879c1" +git-tree-sha1 = "432e9736a222c2ee96432075774187b90f300524" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" -version = "3.2.0" +version = "3.2.2" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1935,10 +1941,10 @@ uuid = "fcd29c91-0bd7-5a09-975d-7ac3f643a60c" version = "0.16.4" [[Quaternions]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "fcebf40de9a04c58da5073ec09c1c1e95944c79b" +deps = ["LinearAlgebra", "Random", "RealDot"] +git-tree-sha1 = "da095158bdc8eaccb7890f9884048555ab771019" uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0" -version = "0.6.1" +version = "0.7.4" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -1979,9 +1985,9 @@ version = "0.1.0" [[RecipesBase]] deps = ["SnoopPrecompile"] -git-tree-sha1 = "18c35ed630d7229c5584b945641a73ca83fb5213" +git-tree-sha1 = "261dddd3b862bd2c940cf6ca4d1c8fe593e457c8" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.2" +version = "1.3.3" [[RecipesPipeline]] deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase", "SnoopPrecompile"] @@ -1990,16 +1996,16 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.11" [[RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "Tables", "ZygoteRules"] -git-tree-sha1 = "a5ce741acddc02f0d4fc6505463ca89697d7fb23" +deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"] +git-tree-sha1 = "fcf0962b399f3bc0fa13ae7274db7879c3ef9f1e" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.32.3" +version = "2.35.0" [[RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "2979cbb21580760431d2afb9b8f0f522899542f7" +git-tree-sha1 = "664aba1c5259821356f2ef771eabc502d67a8f0d" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.13" +version = "0.2.16" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -2050,9 +2056,9 @@ version = "2.0.8" [[Rotations]] deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays", "Statistics"] -git-tree-sha1 = "793b6ef92f9e96167ddbbd2d9685009e200eb84f" +git-tree-sha1 = "9480500060044fd25a1c341da53f34df7443c2f2" uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc" -version = "1.3.3" +version = "1.3.4" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -2065,9 +2071,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SIMD]] deps = ["SnoopPrecompile"] -git-tree-sha1 = "34edfe91375e5883875987e740c554b92c48fc41" +git-tree-sha1 = "8b20084a97b004588125caebf418d8cab9e393d1" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" -version = "3.4.3" +version = "3.4.4" [[SIMDDualNumbers]] deps = ["ForwardDiff", "IfElse", "SLEEFPirates", "VectorizationBase"] @@ -2098,6 +2104,12 @@ git-tree-sha1 = "fe89a8113ea445bcff9ee570077830674babb534" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" version = "1.81.0" +[[SciMLNLSolve]] +deps = ["LineSearches", "NLsolve", "Reexport", "SciMLBase"] +git-tree-sha1 = "b35d1f5d8afeee44e24915bb767e34fae867502f" +uuid = "e9a6253c-8580-4d32-9898-8661bb511710" +version = "0.1.1" + [[ScikitLearnBase]] deps = ["LinearAlgebra", "Random", "Statistics"] git-tree-sha1 = "7877e55c1523a4b336b433da39c8e8c08d2f221f" @@ -2112,15 +2124,15 @@ version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "efd23b378ea5f2db53a55ae53d3133de4e080aa9" +git-tree-sha1 = "c02bd3c9c3fc8463d3591a62a378f90d2d8ab0f3" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.3.16" +version = "1.3.17" [[SequenceVariation]] deps = ["BioAlignments", "BioGenerics", "BioSequences", "BioSymbols"] -git-tree-sha1 = "bf68362e56aa3aa062294b1c808b9a0d13c06351" +git-tree-sha1 = "a3a9e20e02fe59fd00964fa07e5a1bb23630f569" uuid = "eef6e190-9969-4f06-a38f-35a110a8fdc8" -version = "0.1.4" +version = "0.2.1" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2147,10 +2159,10 @@ uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" [[SimpleNonlinearSolve]] -deps = ["ArrayInterfaceCore", "FiniteDiff", "ForwardDiff", "Reexport", "SciMLBase", "SnoopPrecompile", "StaticArraysCore"] -git-tree-sha1 = "fc4b9f81a033cf6879c91bb7f5b3ff59008c7dd2" +deps = ["ArrayInterfaceCore", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Reexport", "SciMLBase", "SnoopPrecompile", "StaticArraysCore"] +git-tree-sha1 = "61b8ffdb22453132e02a10c5638dfb42834c776b" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.4" +version = "0.1.5" [[SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -2171,9 +2183,10 @@ uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" version = "0.1.2" [[SnoopPrecompile]] -git-tree-sha1 = "f604441450a3c0569830946e5b33b78c928e1a85" +deps = ["Preferences"] +git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.1" +version = "1.0.3" [[Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" @@ -2196,9 +2209,9 @@ version = "1.30.0" [[Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "dbe7d12e530416a26135d9566f00946aea1b2474" +git-tree-sha1 = "4149bb50ccf65bc9c9d55e7001ca7aa4a7649603" uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.2" +version = "0.3.4" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -2283,9 +2296,9 @@ version = "1.0.1" [[StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "ThreadingUtilities"] -git-tree-sha1 = "8e91e5618bbca975312313c39ff827ea8f802fe3" +git-tree-sha1 = "70b6ee0e5cc1745a28dd9ba040b8e5ee28fffc69" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.4" +version = "0.4.5" [[StringEncodings]] deps = ["Libiconv_jll"] @@ -2299,9 +2312,9 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.0" [[StringViews]] -git-tree-sha1 = "609585ed628a4cd46f4c142762be37f5ced5dc7d" +git-tree-sha1 = "cddc5eb98c46805ef95a6cf93eb301465ee1af22" uuid = "354b36f9-a18e-4713-926e-db85100087ba" -version = "1.0.3" +version = "1.1.1" [[StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] @@ -2331,9 +2344,9 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" [[Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SciMLBase", "SnoopPrecompile", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "3f8c27118d25ac5cfd36ec382c9c3a834c4d91ad" +git-tree-sha1 = "016f524e060573d77bb8d60cbbb3ffbc7205804b" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.11.4" +version = "4.12.0" [[Sundials_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] @@ -2341,6 +2354,12 @@ git-tree-sha1 = "013ff4504fc1d475aa80c63b455b6b3a58767db2" uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" version = "5.2.0+1" +[[SymbolicIndexingInterface]] +deps = ["DocStringExtensions"] +git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.2.1" + [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" @@ -2420,9 +2439,9 @@ version = "0.3.1" [[TranscodingStreams]] deps = ["Random", "Test"] -git-tree-sha1 = "e4bdc63f5c6d62e80eb1c0043fcc0360d5950ff7" +git-tree-sha1 = "94f38103c984f89cf77c402f2a68dbd870f8165f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.10" +version = "0.9.11" [[TreeViews]] deps = ["Test"] @@ -2432,9 +2451,9 @@ version = "0.3.0" [[TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "Static", "VectorizationBase"] -git-tree-sha1 = "766f5b1fc80f667ad6eab787af21e19cd65cb1b7" +git-tree-sha1 = "6cca884e0fe17916da63c62dc1bf5896ce5d723e" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.16" +version = "0.1.17" [[Tricks]] git-tree-sha1 = "6bac775f2d42a611cdfcd1fb217ee719630c4175" @@ -2477,9 +2496,9 @@ version = "0.4.1" [[UnicodePlots]] deps = ["ColorSchemes", "ColorTypes", "Contour", "Crayons", "Dates", "FileIO", "FreeType", "LinearAlgebra", "MarchingCubes", "NaNMath", "Printf", "Requires", "SnoopPrecompile", "SparseArrays", "StaticArrays", "StatsBase", "Unitful"] -git-tree-sha1 = "e20b01d50cd162593cfd9691628c830769f68987" +git-tree-sha1 = "64b6f4f8ffd783af63819126cb3091f97c3b1aec" uuid = "b8865327-cd53-5732-bb35-84acbb429228" -version = "3.3.1" +version = "3.3.4" [[Unitful]] deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"] @@ -2500,9 +2519,9 @@ version = "0.5.3" [[VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] -git-tree-sha1 = "fc79d0f926592ecaeaee164f6a4ca81b51115c3b" +git-tree-sha1 = "6b1dc4fc039d273abc247eba675ac1299380e5d9" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.56" +version = "0.21.57" [[VertexSafeGraphs]] deps = ["Graphs"] @@ -2755,9 +2774,9 @@ version = "1.5.2+0" [[Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "a6f1287943ac05fae56fa06049d1a7846dfbc65f" +git-tree-sha1 = "e76246c67099856cc9a85a3a809a57980eef2eae" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.51" +version = "0.6.54" [[ZygoteRules]] deps = ["MacroTools"]