diff --git a/Manifest.toml b/Manifest.toml index 1129770..b6f93e1 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1,9 +1,9 @@ # This file is machine-generated - editing it directly is not advised [[ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.5" [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] @@ -55,12 +55,6 @@ git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" version = "7.5.1" -[[ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - [[ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee" @@ -200,9 +194,9 @@ version = "1.2.1" [[BusinessDays]] deps = ["Dates"] -git-tree-sha1 = "81867d77bb14ab7aeab1649ea4f02a44f7604fbb" +git-tree-sha1 = "34d78fce24708b6ac6bb40406cb822809a28bd77" uuid = "4f18b42c-503e-5345-9536-bb0f25fc7038" -version = "0.9.21" +version = "0.9.23" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -253,9 +247,9 @@ version = "0.2.2" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "7e4f5593e7e1ab923cebc5414f6d5433872cdd19" +git-tree-sha1 = "006cc7170be3e0fa02ccac6d4164a1eee1fc8c27" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.56.0" +version = "1.58.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] @@ -526,9 +520,9 @@ version = "7.10.0" [[Discretizers]] deps = ["DataStructures", "SpecialFunctions", "Statistics", "StatsBase"] -git-tree-sha1 = "88a41c96d120c5b76a549601e5800c5743715184" +git-tree-sha1 = "88fd187ed6a84a6f1892ab883484f8ec765108ec" uuid = "6e83dbb3-75ca-525b-8ae2-3751f0dd50b4" -version = "3.2.2" +version = "3.2.3" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] @@ -542,9 +536,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +git-tree-sha1 = "a6c00f894f24460379cb7136633cef54ac9f6f4a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" +version = "0.25.103" [[DocStringExtensions]] deps = ["LibGit2"] @@ -598,9 +592,9 @@ version = "0.1.10" [[EzXML]] deps = ["Printf", "XML2_jll"] -git-tree-sha1 = "0fa3b52a04a4e210aeb1626def9c90df3ae65268" +git-tree-sha1 = "380053d61bb9064d6aa4a9777413b40429c79901" uuid = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615" -version = "1.1.0" +version = "1.2.0" [[FASTX]] deps = ["Automa", "BioGenerics", "BioSequences", "PrecompileTools", "ScanByte", "StringViews", "TranscodingStreams"] @@ -640,9 +634,9 @@ version = "3.3.10+0" [[FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "9d77cb1caf03e67514ba60bcfc47c6e131b1950c" +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.7" +version = "0.2.8" [[FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -1128,9 +1122,9 @@ version = "0.5.0" [[JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "ebec83429b5dea3857e071d927156207ebd6d617" +git-tree-sha1 = "9bbb5130d3b4fa52846546bca4791ecbdfb52730" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.37" +version = "0.4.38" [[JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -1419,10 +1413,10 @@ version = "0.3.26" uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" +deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.165" +version = "0.12.166" [[Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1482,9 +1476,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "13b3d40084d04e609e0509730f05215fb2a2fba4" +git-tree-sha1 = "70ea2892b8bfffecc0387ba1a6a21192814f120c" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.21.0" +version = "1.22.0" [[MathProgBase]] deps = ["LinearAlgebra", "SparseArrays"] @@ -1493,10 +1487,10 @@ uuid = "fdba3010-5040-5b88-9595-932c9decdf73" version = "0.7.8" [[MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.8" [[MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1556,9 +1550,9 @@ version = "0.9.0" [[Mustache]] deps = ["Printf", "Tables"] -git-tree-sha1 = "df7efab120f8619e631f321ca0a5abf76340db5a" +git-tree-sha1 = "a7cefa21a2ff993bff0456bf7521f46fc077ddf1" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" -version = "1.0.18" +version = "1.0.19" [[MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] @@ -1641,9 +1635,9 @@ uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" version = "1.10.1" [[Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[OffsetArrays]] deps = ["Adapt"] @@ -1726,9 +1720,9 @@ version = "1.6.2" [[OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "f4bb6db58944af8d57da3cbb85e8bd96f9d8ea51" +git-tree-sha1 = "f0f43037c0ba045e96f32d65858eb825a211b817" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.58.1" +version = "6.58.2" [[PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1736,9 +1730,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198" +git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.28" +version = "0.11.29" [[PGFPlots]] deps = ["ColorBrewer", "ColorSchemes", "Colors", "Contour", "DataFrames", "DelimitedFiles", "Discretizers", "Distributed", "ImageMagick", "Images", "Printf", "Requires", "StatsBase", "TikzPictures"] @@ -1778,9 +1772,9 @@ version = "2.2.1" [[Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "a935806434c9d4c506ba941871b327b96d41f2bf" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.0" [[Pidfile]] deps = ["FileWatching", "Test"] @@ -1835,9 +1829,9 @@ version = "0.4.4" [[Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842" +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.8" +version = "0.7.9" [[PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1847,9 +1841,9 @@ version = "0.2.1" [[Polynomials]] deps = ["LinearAlgebra", "MakieCore", "RecipesBase", "Setfield", "SparseArrays"] -git-tree-sha1 = "ea78a2764f31715093de7ab495e12c0187f231d1" +git-tree-sha1 = "5a95b69396b77fdb2c48970a535610c4743810e2" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" -version = "4.0.4" +version = "4.0.5" [[PooledArrays]] deps = ["DataAPI", "Future"] @@ -1900,16 +1894,16 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" [[PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.8" +version = "2.3.0" [[Primes]] deps = ["IntegerMathUtils"] -git-tree-sha1 = "4c9f306e5d6603ae203c2000dd460d81a5251489" +git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e" uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.4" +version = "0.5.5" [[Printf]] deps = ["Unicode"] @@ -2024,9 +2018,9 @@ version = "2.38.10" [[RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "2b6d4a40339aa02655b1743f4cd7c03109f520c1" +git-tree-sha1 = "8bc86c78c7d8e2a5fe559e3721c0f9c9e303b2ed" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.20" +version = "0.2.21" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -2071,15 +2065,15 @@ version = "0.4.0+0" [[Roots]] deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +git-tree-sha1 = "0f1d92463a020321983d04c110f476c274bafe2e" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.0.22" [[Rotations]] deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays"] -git-tree-sha1 = "0783924e4a332493f72490253ba4e668aeba1d73" +git-tree-sha1 = "792d8fd4ad770b6d517a13ebb8dadfcac79405b8" uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc" -version = "1.6.0" +version = "1.6.1" [[RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -2092,9 +2086,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SIMD]] deps = ["PrecompileTools"] -git-tree-sha1 = "0e270732477b9e551d884e6b07e23bb2ec947790" +git-tree-sha1 = "d8911cc125da009051fb35322415641d02d9e37f" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" -version = "3.4.5" +version = "3.4.6" [[SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" @@ -2127,9 +2121,9 @@ version = "0.1.9" [[SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[ScikitLearnBase]] deps = ["LinearAlgebra", "Random", "Statistics"] @@ -2139,15 +2133,15 @@ version = "0.5.0" [[Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[SequenceVariation]] deps = ["BioAlignments", "BioGenerics", "BioSequences", "BioSymbols"] @@ -2208,12 +2202,6 @@ git-tree-sha1 = "2da10356e31327c7096832eb9cd86307a50b1eb6" uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" version = "0.1.3" -[[SnoopPrecompile]] -deps = ["Preferences"] -git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.3" - [[Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" @@ -2229,9 +2217,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "bb0ff88a054f2dbf3d54d7630a42b743fcdfa21b" +git-tree-sha1 = "49068dceed7febe32afe2d7b874172a7c3198cb3" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.9.2" +version = "2.12.0" [[SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2334,9 +2322,9 @@ version = "1.0.1" [[StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" +git-tree-sha1 = "e7dd250422df290cee14960c1ee144b44ac3dd77" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.17" +version = "0.5.1" [[StringEncodings]] deps = ["Libiconv_jll"] @@ -2547,9 +2535,9 @@ version = "3.6.0" [[Unitful]] deps = ["ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.18.0" [[UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] @@ -2665,9 +2653,9 @@ version = "1.1.34+0" [[XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.4.5+0" [[Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]