diff --git a/Manifest.toml b/Manifest.toml index f2c8fb7..71eef99 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -63,9 +63,9 @@ version = "0.1.29" [[ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "0d61921af2799487b80453a44abb57db7a0c1381" +git-tree-sha1 = "9a731850434825d183af39c6e6cd0a1c32dd7e20" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.1" +version = "1.4.2" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -158,9 +158,9 @@ version = "2.0.5" [[BioGenerics]] deps = ["TranscodingStreams"] -git-tree-sha1 = "b001ecf63b2eaeb999f70319c0cc920d7d59a31f" +git-tree-sha1 = "7bbc085aebc6faa615740b63756e4986c9e85a70" uuid = "47718e42-2ac5-11e9-14af-e5595289c2ea" -version = "0.1.3" +version = "0.1.4" [[BioSequences]] deps = ["BioSymbols", "PrecompileTools", "Random", "Twiddle"] @@ -252,15 +252,15 @@ version = "0.2.2" [[ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "dbeca245b0680f5393b4e6c40dcead7230ab0b3b" +git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.54.0" +version = "1.55.0" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" +git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.16.0" +version = "1.17.0" [[ChangesOfVariables]] deps = ["InverseFunctions", "LinearAlgebra", "Test"] @@ -282,9 +282,9 @@ version = "0.14.4" [[CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "a1296f0fe01a4c3f9bf0dc2934efbf4416f5db31" +git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.3.4" +version = "1.3.5" [[CodecBase]] deps = ["TranscodingStreams"] @@ -312,9 +312,9 @@ version = "0.7.0" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.3" [[CodecZstd]] deps = ["TranscodingStreams", "Zstd_jll"] @@ -473,9 +473,9 @@ version = "0.12.3" [[DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] -git-tree-sha1 = "92f9967824241fe37d02e6dd76afb73b562a3fcf" +git-tree-sha1 = "df712c77bb43b37ea966feb72cb2e92d51a3face" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.43.0" +version = "5.43.1" [[DelimitedFiles]] deps = ["Mmap"] @@ -495,9 +495,9 @@ version = "6.130.0" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "acc53f895588767cbb296d3d8581ebd203524a2e" +git-tree-sha1 = "6cb07ea2557f425a5464ab1bd21c50464368c1a2" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.33.0" +version = "2.33.1" [[DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] @@ -531,9 +531,9 @@ version = "3.2.2" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9" +git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.9" +version = "0.10.10" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -568,9 +568,9 @@ version = "1.0.4" [[EnzymeCore]] deps = ["Adapt"] -git-tree-sha1 = "1091d4bbc2f2f7840a65fc0496c782b955dd82fb" +git-tree-sha1 = "d8701002a745c450c03b890f10d53636d1a8a7ea" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.0" +version = "0.6.2" [[EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -639,9 +639,9 @@ version = "3.3.10+0" [[FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "aa9925a229d45fe3018715238956766fa21804d1" +git-tree-sha1 = "9d77cb1caf03e67514ba60bcfc47c6e131b1950c" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.6" +version = "0.2.7" [[FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -662,9 +662,9 @@ version = "1.16.1" [[FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] -git-tree-sha1 = "e27c4ebe80e8699540f2d6c805cc12203b614f12" +git-tree-sha1 = "9f00e42f8d99fdde64d40c8ea5d14269a2e2c1aa" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.20" +version = "0.9.21" [[FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -1028,9 +1028,9 @@ uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" version = "1.0.0" [[Inflate]] -git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.3" +version = "0.1.4" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" @@ -1133,9 +1133,9 @@ version = "0.4.35" [[JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.6" [[JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -1181,9 +1181,9 @@ version = "2.1.91+0" [[JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "81dc6aefcbe7421bd62cb6ca0e700779330acff8" +git-tree-sha1 = "0592b1810613d1c95eeebcd22dc11fba186c2a57" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.25" +version = "0.9.26" [[JuliaWebAPI]] deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"] @@ -1397,10 +1397,10 @@ deps = ["Libdl"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[LinearSolve]] -deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "ba01f7a97d3d8bd711b2c00a8a68c887d8a85c9d" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "435ab14ca589757a0feae6e3e347bc37addda42d" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.8.1" +version = "2.9.2" [[LittleCMS_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg"] @@ -1454,10 +1454,10 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.11" [[MakieCore]] -deps = ["Observables"] -git-tree-sha1 = "17d51182db2667962bc7e1d18b74881d0d0adbe6" +deps = ["Observables", "REPL"] +git-tree-sha1 = "a94bf3fef9c690a2a4ac1d09d86a59ab89c7f8e4" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.6.7" +version = "0.6.8" [[ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1708,9 +1708,9 @@ version = "0.5.5+0" [[Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "963b004d15216f8129f6c0f7d187efa136570be0" +git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.7" +version = "1.7.8" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1725,9 +1725,9 @@ version = "1.6.2" [[OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "16d4feaf7e17ac63cb6bb742b0a4dfd50d1ef458" +git-tree-sha1 = "def999a7447854f0e9ca9fdda235e04a65916b76" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.57.0" +version = "6.58.0" [[PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1735,9 +1735,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "bf6085e8bd7735e68c210c6e5d81f9a6fe192060" +git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.19" +version = "0.11.26" [[PGFPlots]] deps = ["ColorBrewer", "ColorSchemes", "Colors", "Contour", "DataFrames", "DelimitedFiles", "Discretizers", "Distributed", "ImageMagick", "Images", "Printf", "Requires", "StatsBase", "TikzPictures"] @@ -1834,9 +1834,9 @@ version = "0.4.4" [[Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086" +git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.7" +version = "0.7.8" [[PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -2017,9 +2017,9 @@ version = "0.6.12" [[RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" +version = "2.39.0" [[RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] @@ -2040,9 +2040,9 @@ version = "0.3.2" [[RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" +version = "1.0.1" [[Requires]] deps = ["UUIDs"] @@ -2227,10 +2227,10 @@ deps = ["LinearAlgebra", "Random"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "42d131931906bf4f0af97a7113c8456d0a8aff9d" +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.6.0" +version = "2.8.0" [[SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2459,9 +2459,9 @@ version = "0.5.2" [[TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"] -git-tree-sha1 = "b7dc44cb005a7ef743b8fe98970afef003efdce7" +git-tree-sha1 = "34cc045dd0aaa59b8bbe86c644679bc57f1d5bd0" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.6.6" +version = "0.6.8" [[TikzPictures]] deps = ["LaTeXStrings", "Poppler_jll", "Requires", "tectonic_jll"] @@ -2494,9 +2494,9 @@ uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" version = "0.1.19" [[Tricks]] -git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.7" +version = "0.1.8" [[TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -2516,9 +2516,9 @@ uuid = "75842c30-9b2d-11e9-3f58-f17fe2b89951" version = "0.2.0" [[URIs]] -git-tree-sha1 = "b7a5e99f24892b6824a954199a45e9ffcc1c70f0" +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.0" +version = "1.5.1" [[UUIDs]] deps = ["Random", "SHA"] @@ -2836,9 +2836,9 @@ version = "0.2.3" [[fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.35.1+0" [[libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]