# This file is machine-generated - editing it directly is not advised [[AbstractFFTs]] deps = ["ChainRulesCore", "LinearAlgebra"] git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.2.1" [[AbstractTrees]] git-tree-sha1 = "03e0550477d86222521d254b741d470ba17ea0b5" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.3.4" [[Adapt]] deps = ["LinearAlgebra"] git-tree-sha1 = "af92965fb30777147966f58acb05da51c5616b5f" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "3.3.3" [[ArgParse]] deps = ["Logging", "TextWrap"] git-tree-sha1 = "3102bce13da501c9104df33549f511cd25264d7d" uuid = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" version = "1.1.4" [[ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" [[ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] git-tree-sha1 = "f87e559f87a45bece9c9ed97458d3afe98b1ebb9" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.1.0" [[Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] git-tree-sha1 = "91ca22c4b8437da89b030f08d71db55a379ce958" uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.3" [[Arpack_jll]] deps = ["Libdl", "OpenBLAS_jll", "Pkg"] git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" [[ArrayInterface]] deps = ["ArrayInterfaceCore", "Compat", "IfElse", "LinearAlgebra", "Static"] git-tree-sha1 = "621913bff3923ff489e4268ba2b425bfacbb1759" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" version = "6.0.21" [[ArrayInterfaceCore]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "8d9e48436c5589fbd51ae8c8165a299a219188c0" uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" version = "0.1.15" [[ArrayInterfaceGPUArrays]] deps = ["Adapt", "ArrayInterfaceCore", "GPUArraysCore", "LinearAlgebra"] git-tree-sha1 = "febba7add2873aecc0b6620b55969e73ec875bce" uuid = "6ba088a2-8465-4c0a-af30-387133b534db" version = "0.2.1" [[ArrayInterfaceOffsetArrays]] deps = ["ArrayInterface", "OffsetArrays", "Static"] git-tree-sha1 = "c49f6bad95a30defff7c637731f00934c7289c50" uuid = "015c0d05-e682-4f19-8f0a-679ce4c54826" version = "0.1.6" [[ArrayInterfaceStaticArrays]] deps = ["Adapt", "ArrayInterface", "ArrayInterfaceStaticArraysCore", "LinearAlgebra", "Static", "StaticArrays"] git-tree-sha1 = "efb000a9f643f018d5154e56814e338b5746c560" uuid = "b0d46f97-bff5-4637-a19a-dd75974142cd" version = "0.1.4" [[ArrayInterfaceStaticArraysCore]] deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] git-tree-sha1 = "a1e2cf6ced6505cbad2490532388683f1e88c3ed" uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" version = "0.1.0" [[ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "ebe4bbfc4de38ef88323f67d60a4e848fb550f0e" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" version = "0.8.9" [[Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" [[AssetRegistry]] deps = ["Distributed", "JSON", "Pidfile", "SHA", "Test"] git-tree-sha1 = "b25e88db7944f98789130d7b503276bc34bc098e" uuid = "bf4720bc-e11a-5d0c-854e-bdca1663c893" version = "0.1.0" [[AutoHashEquals]] git-tree-sha1 = "45bb6705d93be619b81451bb2006b7ee5d4e4453" uuid = "15f4f7f2-30c1-5605-9d31-71845cf9641f" version = "0.2.0" [[Automa]] deps = ["Printf", "ScanByte", "TranscodingStreams"] git-tree-sha1 = "d50976f217489ce799e366d9561d56a98a30d7fe" uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b" version = "0.8.2" [[AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" version = "1.0.1" [[AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] git-tree-sha1 = "1dd4d9f5beebac0c03446918741b1a03dc5e5788" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.6" [[BBI]] deps = ["BioCore", "Libz"] git-tree-sha1 = "1dc447cec8b0e52d307a1bdd398c9dcd4aeba0e2" uuid = "19670fab-07f0-5a41-99c5-c090d774ee27" version = "0.2.1" [[BED]] deps = ["Automa", "BGZFStreams", "BioGenerics", "ColorTypes", "FixedPointNumbers", "GenomicFeatures", "Indexes", "TranscodingStreams"] git-tree-sha1 = "d2bdf452eecd746da47a3ef85804f659396e09ef" uuid = "8e4a8c10-cb6b-11e8-08d2-83478d609d67" version = "0.3.0" [[BGZFStreams]] deps = ["CodecZlib"] git-tree-sha1 = "a9c80401403c068c02784cd53d417d3a82e2d2bd" uuid = "28d598bf-9b8f-59f1-b38c-5a06b4a0f5e6" version = "0.3.1" [[BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] git-tree-sha1 = "0227886a3141dfbb9fab5bfbf2133ac57677c1f9" uuid = "aae01518-5342-5314-be14-df237901396f" version = "0.17.3" [[Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] git-tree-sha1 = "4c10eee4af024676200bc7752e536f858c6b8f93" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" version = "1.3.1" [[BigWig]] deps = ["BBI", "BioCore", "BufferedStreams", "GenomicFeatures", "Libz"] git-tree-sha1 = "b83f8ab279139bdd68b593bee5862fdb0b855b98" uuid = "9d649c22-cb6b-11e8-1fa9-f3896fced444" version = "0.1.0" [[BioAlignments]] deps = ["BioGenerics", "BioSequences", "BioSymbols", "IntervalTrees", "LinearAlgebra"] git-tree-sha1 = "29e735a07a5f03e76f0ce99f2293cecd946c3729" repo-rev = "operations-fix" repo-url = "https://github.com/MillironX/BioAlignments.jl" uuid = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e" version = "2.1.0" [[BioCore]] deps = ["Automa", "BufferedStreams", "YAML"] git-tree-sha1 = "476edbf4ef94594fff430a84ca96f86cb2327a71" uuid = "37cfa864-2cd6-5c12-ad9e-b6597d696c81" version = "2.0.5" [[BioGenerics]] deps = ["TranscodingStreams"] git-tree-sha1 = "6d3f3b474b3df2e83dc67ad12ec63aee4eb5241b" uuid = "47718e42-2ac5-11e9-14af-e5595289c2ea" version = "0.1.1" [[BioSequences]] deps = ["BioGenerics", "BioSymbols", "Combinatorics", "IndexableBitVectors", "Printf", "Random", "StableRNGs", "Twiddle"] git-tree-sha1 = "093ccb9211bdc71924abf8e74a0790af11da35a7" uuid = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59" version = "2.0.5" [[BioServices]] deps = ["Dates", "Gumbo", "HTTP", "JSON", "XMLDict"] git-tree-sha1 = "0e95f5b4a48df7cc9bbb7cf0b407577cb0aea17e" uuid = "a0d4ced5-b29c-5395-b614-ca030a679c4b" version = "0.4.0" [[BioStructures]] deps = ["BioAlignments", "BioCore", "BioGenerics", "BioSequences", "BioSymbols", "CodecZlib", "DataFrames", "Downloads", "Format", "Graphs", "LinearAlgebra", "MMTF", "MetaGraphs", "RecipesBase", "Statistics"] git-tree-sha1 = "2153767a968c8e2028cefcd6e221fc66c008951a" uuid = "de9282ab-8554-53be-b2d6-f6c222edabfc" version = "1.2.1" [[BioSymbols]] deps = ["Automa"] git-tree-sha1 = "ec77888ac3e78f9d372c2b533bdb52668f9e2b09" uuid = "3c28c6f8-a34d-59c4-9654-267d177fcfa9" version = "4.0.4" [[BitTwiddlingConvenienceFunctions]] deps = ["Static"] git-tree-sha1 = "eaee37f76339077f86679787a71990c4e465477f" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.4" [[BoundaryValueDiffEq]] deps = ["BandedMatrices", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase", "SparseArrays"] git-tree-sha1 = "2f80b70bd3ddd9aa3ec2d77604c1121bd115650e" uuid = "764a87c0-6b3e-53db-9096-fe964310641d" version = "2.9.0" [[BufferedStreams]] git-tree-sha1 = "bb065b14d7f941b8617bc323063dbe79f55d16ea" uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d" version = "1.1.0" [[BusinessDays]] deps = ["Dates"] git-tree-sha1 = "0fa16b8e9abf893a5009008752e292f599c4f9b5" uuid = "4f18b42c-503e-5345-9536-bb0f25fc7038" version = "0.9.18" [[Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+0" [[CEnum]] git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.4.2" [[CPUSummary]] deps = ["CpuId", "IfElse", "Static"] git-tree-sha1 = "8a43595f7b3f7d6dd1e07ad9b94081e1975df4af" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.1.25" [[CSSUtil]] deps = ["Colors", "JSON", "Markdown", "Measures", "WebIO"] git-tree-sha1 = "b9fb4b464ec10e860abe251b91d4d049934f7399" uuid = "70588ee8-6100-5070-97c1-3cb50ed05fe8" version = "0.1.1" [[CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"] git-tree-sha1 = "49f14b6c56a2da47608fe30aed711b5882264d7a" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" version = "0.9.11" [[Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.16.1+1" [[Calculus]] deps = ["LinearAlgebra"] git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" version = "0.5.1" [[CatIndices]] deps = ["CustomUnitRanges", "OffsetArrays"] git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc" uuid = "aafaddc9-749c-510e-ac4f-586e18779b91" version = "0.2.2" [[ChainRules]] deps = ["ChainRulesCore", "Compat", "Distributed", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics"] git-tree-sha1 = "e762b70af7c1d914f677d9588a1d3b32e5f832af" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" version = "1.39.1" [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "80ca332f6dcb2508adba68f22f551adb2d00a624" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" version = "1.15.3" [[ChangesOfVariables]] deps = ["ChainRulesCore", "LinearAlgebra", "Test"] git-tree-sha1 = "38f7a08f19d8810338d4f5085211c7dfa5d5bdd8" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" version = "0.1.4" [[CloseOpenIntervals]] deps = ["ArrayInterface", "Static"] git-tree-sha1 = "5522c338564580adf5d58d91e43a55db0fa5fb39" uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" version = "0.1.10" [[Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "SparseArrays", "Statistics", "StatsBase"] git-tree-sha1 = "75479b7df4167267d75294d14b58244695beb2ac" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" version = "0.14.2" [[CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] git-tree-sha1 = "6d4fa04343a7fc9f9cb9cff9558929f3d2752717" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" version = "1.0.9" [[CodecBase]] deps = ["TranscodingStreams"] git-tree-sha1 = "744128fbfc6fe0739085d995b1756f1856964d4c" uuid = "6c391c72-fb7b-5838-ba82-7cfb1bcfecbf" version = "0.3.0" [[CodecBzip2]] deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] git-tree-sha1 = "2e62a725210ce3c3c2e1a3080190e7ca491f18d7" uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" version = "0.7.2" [[CodecLz4]] deps = ["Lz4_jll", "TranscodingStreams"] git-tree-sha1 = "59fe0cb37784288d6b9f1baebddbf75457395d40" uuid = "5ba52731-8f18-5e0d-9241-30f10d1ec561" version = "0.4.0" [[CodecXz]] deps = ["Libdl", "TranscodingStreams", "XZ_jll"] git-tree-sha1 = "82c4c000edf64b6bda6766377e69a1028f3549ee" uuid = "ba30903b-d9e8-5048-a5ec-d1f5b0d4b47b" version = "0.7.0" [[CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" version = "0.7.0" [[CodecZstd]] deps = ["CEnum", "TranscodingStreams", "Zstd_jll"] git-tree-sha1 = "849470b337d0fa8449c21061de922386f32949d9" uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" version = "0.7.2" [[ColorBrewer]] deps = ["Colors", "JSON", "Test"] git-tree-sha1 = "61c5334f33d91e570e1d0c3eb5465835242582c4" uuid = "a2cac450-b92f-5266-8821-25eda20663c8" version = "0.4.0" [[ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Random"] git-tree-sha1 = "1fd869cc3875b57347f7027521f561cf46d1fcd8" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" version = "3.19.0" [[ColorTypes]] deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.11.4" [[ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"] git-tree-sha1 = "d08c20eef1f2cbc6e60fd3612ac4340b89fea322" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" version = "0.9.9" [[Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] git-tree-sha1 = "417b0ed7b8b838aa6ca0a87aadf1bb9eb111ce40" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.8" [[Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.0.2" [[CommonSolve]] git-tree-sha1 = "332a332c97c7071600984b3c31d9067e1a4e6e25" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" version = "0.2.1" [[CommonSubexpressions]] deps = ["MacroTools", "Test"] git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[Compat]] deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] git-tree-sha1 = "9be8be1d8a6f44b96482c8af52238ea7987da3e3" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "3.45.0" [[CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" [[ComputationalResources]] git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7" uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3" version = "0.3.2" [[ConstructionBase]] deps = ["LinearAlgebra"] git-tree-sha1 = "59d00b3139a9de4eb961057eabb65ac6522be954" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.4.0" [[Contour]] deps = ["StaticArrays"] git-tree-sha1 = "9f02045d934dc030edad45944ea80dbd1f0ebea7" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.5.7" [[CoordinateTransformations]] deps = ["LinearAlgebra", "StaticArrays"] git-tree-sha1 = "681ea870b918e7cff7111da58791d7f718067a19" uuid = "150eb455-5306-5404-9cee-2592286d6298" version = "0.6.2" [[CpuId]] deps = ["Markdown"] git-tree-sha1 = "32d125af0fb8ec3f8935896122c5e345709909e5" uuid = "adafc99b-e345-5852-983c-f28acb93d879" version = "0.3.0" [[Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[CustomUnitRanges]] git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a" uuid = "dc8bdbbb-1ca9-579f-8c36-e416f6a65cce" version = "1.0.2" [[DSP]] deps = ["Compat", "FFTW", "IterTools", "LinearAlgebra", "Polynomials", "Random", "Reexport", "SpecialFunctions", "Statistics"] git-tree-sha1 = "3fb5d9183b38fdee997151f723da42fb83d1c6f2" uuid = "717857b8-e6f2-59f4-9121-6e50c889abd2" version = "0.7.6" [[DataAPI]] git-tree-sha1 = "fb5f5316dd3fd4c5e7c30a24d50643b73e37cd40" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.10.0" [[DataFrames]] deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] git-tree-sha1 = "daa21eb85147f72e41f6352a57fccea377e310a9" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" version = "1.3.4" [[DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" version = "0.18.13" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" version = "1.0.0" [[DataValues]] deps = ["DataValueInterfaces", "Dates"] git-tree-sha1 = "d88a19299eba280a6d062e135a43f00323ae70bf" uuid = "e7dc6d0d-1eca-5fa6-8ad6-5aecde8b7ea5" version = "0.4.13" [[Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[Debugger]] deps = ["CodeTracking", "Crayons", "Highlights", "InteractiveUtils", "JuliaInterpreter", "Markdown", "REPL"] git-tree-sha1 = "2e1376ac793d255c8a312a99b961ef64ae60ffee" uuid = "31a5f54b-26ea-5ae9-a837-f05ce5417438" version = "0.7.6" [[DecisionTree]] deps = ["AbstractTrees", "DelimitedFiles", "LinearAlgebra", "Random", "ScikitLearnBase", "Statistics"] git-tree-sha1 = "fb3f7ff27befb9877bee84076dd9173185d7d86a" uuid = "7806a523-6efd-50cb-b5f6-3fa6f1930dbb" version = "0.11.2" [[DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "UnPack"] git-tree-sha1 = "078f21d61a6f43a7b3eab4620ac958183e44cee2" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" version = "5.37.0" [[DelimitedFiles]] deps = ["Mmap"] uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" [[DensityInterface]] deps = ["InverseFunctions", "Test"] git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" version = "0.4.0" [[DiffEqBase]] deps = ["ArrayInterfaceCore", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "StaticArrays", "Statistics", "ZygoteRules"] git-tree-sha1 = "3fc96d4d32e5eed475c28a0e4762c6f558558fb6" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" version = "6.94.4" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"] git-tree-sha1 = "cfef2afe8d73ed2d036b0e4b14a3f9b53045c534" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" version = "2.23.1" [[DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArrays", "Statistics"] git-tree-sha1 = "6f3fe6ebe1b6e6e3a9b72739ada313aa17c9bb66" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" version = "5.12.0" [[DiffResults]] deps = ["StaticArrays"] git-tree-sha1 = "c18e98cba888c6c25d1c3b048e4b3380ca956805" uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" version = "1.0.3" [[DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] git-tree-sha1 = "28d605d9a0ac17118fe2c5e9ce0fbb76c3ceb120" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.11.0" [[DifferentialEquations]] deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] git-tree-sha1 = "0ccc4356a8f268d5eee641f0944074560c45267a" uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa" version = "7.2.0" [[Discretizers]] deps = ["DataStructures", "SpecialFunctions", "Statistics", "StatsBase"] git-tree-sha1 = "88a41c96d120c5b76a549601e5800c5743715184" uuid = "6e83dbb3-75ca-525b-8ae2-3751f0dd50b4" version = "3.2.2" [[Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.7" [[Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] git-tree-sha1 = "aafa0665e3db0d3d0890cdc8191ea03dc279b042" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" version = "0.25.66" [[DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "5158c2b41018c5f7eb1470d558127ac274eca0c9" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.1" [[Downloads]] deps = ["ArgTools", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" [[DualNumbers]] deps = ["Calculus", "NaNMath", "SpecialFunctions"] git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "3f3a2501fa7236e9b911e0f7a588c657e822bb6d" uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" version = "2.2.3+0" [[Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.4.8+0" [[ExponentialUtilities]] deps = ["ArrayInterfaceCore", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SparseArrays", "libblastrampoline_jll"] git-tree-sha1 = "b40c9037e1a33990466bc5d224ced34b34eebdb0" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" version = "1.18.0" [[EzXML]] deps = ["Printf", "XML2_jll"] git-tree-sha1 = "0fa3b52a04a4e210aeb1626def9c90df3ae65268" uuid = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615" version = "1.1.0" [[FASTX]] deps = ["Automa", "BioGenerics", "BioSequences", "BioSymbols", "TranscodingStreams"] git-tree-sha1 = "6582055aa8f890663f63cbf9bc748b0a537b5fd3" uuid = "c2308a5c-f048-11e8-3e8a-31650f418d12" version = "1.2.0" [[FFMPEG]] deps = ["FFMPEG_jll"] git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] git-tree-sha1 = "ccd479984c7838684b3ac204b716c89955c76623" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" version = "4.4.2+0" [[FFTViews]] deps = ["CustomUnitRanges", "FFTW"] git-tree-sha1 = "cbdf14d1e8c7c8aacbe8b19862e0179fd08321c2" uuid = "4f61f5a4-77b1-5117-aa51-3ab5ef4ef0cd" version = "0.3.2" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] git-tree-sha1 = "90630efff0894f8142308e334473eba54c433549" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" version = "1.5.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+0" [[FastBroadcast]] deps = ["ArrayInterface", "ArrayInterfaceCore", "LinearAlgebra", "Polyester", "Static", "StrideArraysCore"] git-tree-sha1 = "21cdeff41e5a1822c2acd7fc7934c5f450588e00" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" version = "0.2.1" [[FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" [[FastLapackInterface]] deps = ["LinearAlgebra"] git-tree-sha1 = "9c77a18eddbc4f7b5edbd2f1c28467ba4ba787bd" uuid = "29a986be-02c6-4525-aec4-84b980013641" version = "1.1.0" [[FileIO]] deps = ["Pkg", "Requires", "UUIDs"] git-tree-sha1 = "9267e5f50b0e12fdfd5a2455534345c4cf2c7f7a" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" version = "1.14.0" [[FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] git-tree-sha1 = "129b104185df66e408edd6625d480b7f9e9823a0" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" version = "0.9.18" [[FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] git-tree-sha1 = "246621d23d1f43e3b9c368bf3b72b2331a27c286" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" version = "0.13.2" [[FiniteDiff]] deps = ["ArrayInterfaceCore", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] git-tree-sha1 = "cb8c5f0074153ace28ce5100714df4378ad885e0" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" version = "2.14.0" [[FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[Format]] git-tree-sha1 = "03bcdf8ab1a5b9e6455ccb45c30910d282aa09f4" uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" version = "1.3.2" [[Formatting]] deps = ["Printf"] git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] git-tree-sha1 = "2f18915445b248731ec5db4e4a17e451020bf21e" uuid = "f6369f11-7733-5829-9624-2563aa707210" version = "0.10.30" [[FreeType]] deps = ["CEnum", "FreeType2_jll"] git-tree-sha1 = "cabd77ab6a6fdff49bfd24af2ebe76e6e018a2b4" uuid = "b38be410-82b0-50bf-ab77-7b57e271db43" version = "4.0.0" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] git-tree-sha1 = "87eb71354d8ec1a96d4a7636bd57a7347dde3ef9" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" version = "2.10.4+0" [[FreeTypeAbstraction]] deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] git-tree-sha1 = "38a92e40157100e796690421e34a11c107205c86" uuid = "663a7486-cb36-511b-a19d-713bb74d65c9" version = "0.10.0" [[FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.10+0" [[FunctionWrappers]] git-tree-sha1 = "241552bc2209f0fa068b6415b1942cc0aa486bcc" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.2" [[FunctionalCollections]] deps = ["Test"] git-tree-sha1 = "04cb9cfaa6ba5311973994fe3496ddec19b6292a" uuid = "de31a74c-ac4f-5751-b3fd-e18cd04993ca" version = "0.5.0" [[Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[GFF3]] deps = ["Automa", "BGZFStreams", "BioGenerics", "BioSequences", "FASTX", "GenomicFeatures", "Indexes", "TranscodingStreams", "URIParser"] git-tree-sha1 = "41449da1ca0e67339caf0c2c916950a90d25bd52" uuid = "af1dc308-cb6b-11e8-32f0-31192efa90f6" version = "0.2.1" [[GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] git-tree-sha1 = "51d2dfe8e590fbd74e7a842cf6d13d8a2f45dc01" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" version = "3.3.6+0" [[GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "StatsModels"] git-tree-sha1 = "039118892476c2bf045a43b88fcb75ed566000ff" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" version = "1.8.0" [[GMP_jll]] deps = ["Artifacts", "Libdl"] uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" [[GPUArraysCore]] deps = ["Adapt"] git-tree-sha1 = "d88b17a38322e153c519f5a9ed8d91e9baa03d8f" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" version = "0.1.1" [[GR]] deps = ["Base64", "DelimitedFiles", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Printf", "Random", "RelocatableFolders", "Serialization", "Sockets", "Test", "UUIDs"] git-tree-sha1 = "037a1ca47e8a5989cc07d19729567bb71bfabd0c" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" version = "0.66.0" [[GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "c8ab731c9127cd931c93221f65d6a1008dad7256" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.66.0+0" [[GenericSchur]] deps = ["LinearAlgebra", "Printf"] git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" version = "0.5.3" [[GenomeGraphs]] deps = ["BioSequences", "FASTX", "ReadDatastores"] git-tree-sha1 = "901468d589c1432556e5b982d1a9618617e25c36" uuid = "3aa97884-90e5-11e8-2134-af657ec4f203" version = "0.2.0" [[GenomicAnnotations]] deps = ["BioGenerics", "BioSequences", "CodecZlib", "DataFrames", "TranscodingStreams"] git-tree-sha1 = "e0b5e58635c60590aaa3425f0b24ba37c698776b" uuid = "4f8a0a0a-376d-5ac0-ab14-e88793df67f0" version = "0.3.1" [[GenomicFeatures]] deps = ["BioGenerics", "DataStructures", "IntervalTrees"] git-tree-sha1 = "881bda64be17d6eefdb6dfccc329fdb904fa596e" uuid = "899a7d2d-5c61-547b-bef9-6698a8d05446" version = "2.0.5" [[GeometryBasics]] deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] git-tree-sha1 = "83ea630384a13fc4f002b77690bc0afeb4255ac9" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" version = "0.4.2" [[Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" version = "0.21.0+0" [[Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "a32d672ac2c967f3deb8a81d828afc739c838a06" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" version = "2.68.3+2" [[Graphics]] deps = ["Colors", "LinearAlgebra", "NaNMath"] git-tree-sha1 = "d61890399bc535850c4bf08e4e0d3a7ad0f21cbd" uuid = "a2bd30eb-e257-5431-a919-1863eab51364" version = "1.1.2" [[Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.14+0" [[Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] git-tree-sha1 = "db5c7e27c0d46fd824d470a3c32a4fc6c935fa96" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" version = "1.7.1" [[Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[Gumbo]] deps = ["AbstractTrees", "Gumbo_jll", "Libdl"] git-tree-sha1 = "a4b03190a8d79e95b2f418df44f74cbc34289920" uuid = "708ec375-b3d6-5a57-a7ce-8257bf98657a" version = "0.8.1" [[Gumbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "29070dee9df18d9565276d68a596854b1764aa38" uuid = "528830af-5a63-567c-a44a-034ed33b8444" version = "0.10.2+0" [[HTTP]] deps = ["Base64", "Dates", "IniFile", "Logging", "MbedTLS", "NetworkOptions", "Sockets", "URIs"] git-tree-sha1 = "0fa77022fe4b511826b39c894c90daf5fce3334a" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" version = "0.9.17" [[HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "2.8.1+1" [[Highlights]] deps = ["DocStringExtensions", "InteractiveUtils", "REPL"] git-tree-sha1 = "0341077e8a6b9fc1c2ea5edc1e93a956d2aec0c7" uuid = "eafb193a-b7ab-5a9e-9068-77385905fa72" version = "0.5.2" [[HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] git-tree-sha1 = "b7b88a4716ac33fe31d6556c02fc60017594343c" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" version = "0.1.8" [[HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions", "Test"] git-tree-sha1 = "709d864e3ed6e3545230601f94e11ebc65994641" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" version = "0.3.11" [[HypothesisTests]] deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Random", "Rmath", "Roots", "Statistics", "StatsBase"] git-tree-sha1 = "10b23fc711999d34f6888ab6df4c510def193fd9" uuid = "09f84164-cd44-5f33-b23f-e6b0d136a0d5" version = "0.10.10" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] git-tree-sha1 = "af14a478780ca78d5eb9908b263023096c2b9d64" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" version = "0.4.6" [[IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" [[ImageAxes]] deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"] git-tree-sha1 = "c54b581a83008dc7f292e205f4c409ab5caa0f04" uuid = "2803e5a7-5153-5ecf-9a86-9b4c37f5f5ac" version = "0.6.10" [[ImageBase]] deps = ["ImageCore", "Reexport"] git-tree-sha1 = "b51bb8cae22c66d0f6357e3bcb6363145ef20835" uuid = "c817782e-172a-44cc-b673-b171935fbb9e" version = "0.1.5" [[ImageContrastAdjustment]] deps = ["ImageCore", "ImageTransformations", "Parameters"] git-tree-sha1 = "0d75cafa80cf22026cea21a8e6cf965295003edc" uuid = "f332f351-ec65-5f6a-b3d1-319c6670881a" version = "0.3.10" [[ImageCore]] deps = ["AbstractFFTs", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Graphics", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "Reexport"] git-tree-sha1 = "acf614720ef026d38400b3817614c45882d75500" uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" version = "0.9.4" [[ImageDistances]] deps = ["Distances", "ImageCore", "ImageMorphology", "LinearAlgebra", "Statistics"] git-tree-sha1 = "b1798a4a6b9aafb530f8f0c4a7b2eb5501e2f2a3" uuid = "51556ac3-7006-55f5-8cb3-34580c88182d" version = "0.2.16" [[ImageFiltering]] deps = ["CatIndices", "ComputationalResources", "DataStructures", "FFTViews", "FFTW", "ImageBase", "ImageCore", "LinearAlgebra", "OffsetArrays", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "TiledIteration"] git-tree-sha1 = "15bd05c1c0d5dbb32a9a3d7e0ad2d50dd6167189" uuid = "6a3955dd-da59-5b1f-98d4-e7296123deb5" version = "0.7.1" [[ImageIO]] deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs"] git-tree-sha1 = "342f789fd041a55166764c351da1710db97ce0e0" uuid = "82e4d734-157c-48bb-816b-45c225c6df19" version = "0.6.6" [[ImageMagick]] deps = ["FileIO", "ImageCore", "ImageMagick_jll", "InteractiveUtils"] git-tree-sha1 = "ca8d917903e7a1126b6583a097c5cb7a0bedeac1" uuid = "6218d12a-5da1-5696-b52f-db25d2ecc6d1" version = "1.2.2" [[ImageMagick_jll]] deps = ["JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "1c0a2295cca535fabaf2029062912591e9b61987" uuid = "c73af94c-d91f-53ed-93a7-00f77d67a9d7" version = "6.9.10-12+3" [[ImageMetadata]] deps = ["AxisArrays", "ImageAxes", "ImageBase", "ImageCore"] git-tree-sha1 = "36cbaebed194b292590cba2593da27b34763804a" uuid = "bc367c6b-8a6b-528e-b4bd-a4b897500b49" version = "0.9.8" [[ImageMorphology]] deps = ["ImageCore", "LinearAlgebra", "Requires", "TiledIteration"] git-tree-sha1 = "e7c68ab3df4a75511ba33fc5d8d9098007b579a8" uuid = "787d08f9-d448-5407-9aad-5290dd7ab264" version = "0.3.2" [[ImageQualityIndexes]] deps = ["ImageContrastAdjustment", "ImageCore", "ImageDistances", "ImageFiltering", "LazyModules", "OffsetArrays", "Statistics"] git-tree-sha1 = "0c703732335a75e683aec7fdfc6d5d1ebd7c596f" uuid = "2996bd0c-7a13-11e9-2da2-2f5ce47296a9" version = "0.3.3" [[ImageSegmentation]] deps = ["Clustering", "DataStructures", "Distances", "Graphs", "ImageCore", "ImageFiltering", "ImageMorphology", "LinearAlgebra", "MetaGraphs", "RegionTrees", "SimpleWeightedGraphs", "StaticArrays", "Statistics"] git-tree-sha1 = "36832067ea220818d105d718527d6ed02385bf22" uuid = "80713f31-8817-5129-9cf8-209ff8fb23e1" version = "1.7.0" [[ImageShow]] deps = ["Base64", "FileIO", "ImageBase", "ImageCore", "OffsetArrays", "StackViews"] git-tree-sha1 = "b563cf9ae75a635592fc73d3eb78b86220e55bd8" uuid = "4e3cecfd-b093-5904-9786-8bbb286a6a31" version = "0.3.6" [[ImageTransformations]] deps = ["AxisAlgorithms", "ColorVectorSpace", "CoordinateTransformations", "ImageBase", "ImageCore", "Interpolations", "OffsetArrays", "Rotations", "StaticArrays"] git-tree-sha1 = "8717482f4a2108c9358e5c3ca903d3a6113badc9" uuid = "02fcd773-0e25-5acc-982a-7f6622650795" version = "0.9.5" [[Images]] deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageContrastAdjustment", "ImageCore", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"] git-tree-sha1 = "03d1301b7ec885b266c0f816f338368c6c0b81bd" uuid = "916415d5-f1e6-5110-898d-aaa5f9f070e0" version = "0.25.2" [[Imath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "87f7662e03a649cffa2e05bf19c303e168732d3e" uuid = "905a6f67-0a94-5f89-b386-d35d92009cd1" version = "3.1.2+0" [[IndexableBitVectors]] deps = ["Random", "Test"] git-tree-sha1 = "b7f5e42dc867b8a8654a5f899064632dac05bc82" uuid = "1cb3b9ac-1ffd-5777-9e6b-a3d42300664d" version = "1.0.0" [[Indexes]] deps = ["BGZFStreams", "BioGenerics", "GenomicFeatures", "TranscodingStreams"] git-tree-sha1 = "275bce824b40fd2e70358e0a652ba1b34172f240" uuid = "4ffb77ac-cb80-11e8-1b35-4b78cc642f6d" version = "0.1.3" [[IndirectArrays]] git-tree-sha1 = "012e604e1c7458645cb8b436f8fba789a51b257f" uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" version = "1.0.0" [[Inflate]] git-tree-sha1 = "f5fc07d4e706b84f72d54eedcc1c13d92fb0871c" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.2" [[IniFile]] git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f" version = "0.5.1" [[InlineStrings]] deps = ["Parsers"] git-tree-sha1 = "d19f9edd8c34760dca2de2b503f969d8700ed288" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" version = "1.1.4" [[IntegerMathUtils]] git-tree-sha1 = "f366daebdfb079fd1fe4e3d560f99a0c892e15bc" uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" version = "0.1.0" [[IntegralArrays]] deps = ["ColorTypes", "FixedPointNumbers", "IntervalSets"] git-tree-sha1 = "be8e690c3973443bec584db3346ddc904d4884eb" uuid = "1d092043-8f09-5a30-832f-7509e371ab51" version = "0.1.5" [[IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "d979e54b71da82f3a65b62553da4fc3d18c9004c" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" version = "2018.0.3+2" [[Interact]] deps = ["CSSUtil", "InteractBase", "JSON", "Knockout", "Observables", "OrderedCollections", "Reexport", "WebIO", "Widgets"] git-tree-sha1 = "311f9130aeb50ac93a12dd076fa02c9a430be525" uuid = "c601a237-2ae4-5e1e-952c-7a85b0c7eef1" version = "0.10.4" [[InteractBase]] deps = ["Base64", "CSSUtil", "Colors", "Dates", "JSExpr", "JSON", "Knockout", "Observables", "OrderedCollections", "Random", "WebIO", "Widgets"] git-tree-sha1 = "3ace4760fab1c9700ec9c68ab0e36e0856f05556" uuid = "d3863d7c-f0c8-5437-a7b4-3ae773c01009" version = "0.10.8" [[InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[Interpolations]] deps = ["AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] git-tree-sha1 = "b7bc05649af456efc75d178846f47006c2c4c3c7" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" version = "0.13.6" [[IntervalSets]] deps = ["Dates", "Random", "Statistics"] git-tree-sha1 = "57af5939800bce15980bddd2426912c4f83012d8" uuid = "8197267c-284f-5f27-9208-e0e47529a953" version = "0.7.1" [[IntervalTrees]] deps = ["InteractiveUtils", "Profile", "Random", "Test"] git-tree-sha1 = "6c9fcd87677231ae293f6806fad928c216ab6658" uuid = "524e6230-43b7-53ae-be76-1e9e4d08d11b" version = "1.0.0" [[InverseFunctions]] deps = ["Test"] git-tree-sha1 = "b3364212fb5d870f724876ffcd34dd8ec6d98918" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.7" [[InvertedIndices]] git-tree-sha1 = "bee5f1ef5bf65df56bdd2e40447590b272a5471f" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.1.0" [[IrrationalConstants]] git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.1.1" [[IterTools]] git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" version = "1.4.0" [[IterativeSolvers]] deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"] git-tree-sha1 = "1169632f425f79429f245113b775a0e3d121457c" uuid = "42fd0dbc-a981-5370-80f2-aaf504508153" version = "0.9.2" [[IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[JDBC]] deps = ["Dates", "JavaCall", "Tables"] git-tree-sha1 = "64e5bdfde946257ddf9be6d8c35fbfc11c37df22" uuid = "6042db11-3c3d-5e84-8dba-9cbf74c9ba48" version = "0.5.0" [[JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "TranscodingStreams", "UUIDs"] git-tree-sha1 = "81b9477b49402b47fbe7f7ae0b252077f53e4a08" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" version = "0.4.22" [[JLLWrappers]] deps = ["Preferences"] git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" version = "1.4.1" [[JSExpr]] deps = ["JSON", "MacroTools", "Observables", "WebIO"] git-tree-sha1 = "b413a73785b98474d8af24fd4c8a975e31df3658" uuid = "97c1335a-c9c5-57fe-bc5d-ec35cebe8660" version = "0.5.4" [[JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.3" [[JSON3]] deps = ["Dates", "Mmap", "Parsers", "StructTypes", "UUIDs"] git-tree-sha1 = "fd6f0cae36f42525567108a42c1c674af2ac620d" uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" version = "1.9.5" [[JavaCall]] deps = ["DataStructures", "Dates", "Libdl", "WinReg"] git-tree-sha1 = "2ca155cf69fe84e7c77992ce891f98fee93be834" uuid = "494afd89-becb-516b-aafa-70d2670c0337" version = "0.7.8" [[JpegTurbo]] deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] git-tree-sha1 = "a77b273f1ddec645d1b7c4fd5fb98c8f90ad10a5" uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0" version = "0.1.1" [[JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" version = "2.1.2+0" [[JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] git-tree-sha1 = "1101d9e5a062963612e8d2bd5bd653d73ae033f4" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" version = "0.9.14" [[JuliaWebAPI]] deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"] git-tree-sha1 = "406312059ce21c67826152ad6f3545c7fc9893ba" uuid = "480116ec-64ea-5dec-baca-db6b11e96e37" version = "0.6.3" [[JumpProcesses]] deps = ["ArrayInterfaceCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] git-tree-sha1 = "4aa139750616fee7216ddcb30652357c60c3683e" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" version = "9.0.1" [[KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] git-tree-sha1 = "cae5e3dfd89b209e01bcd65b3a25e74462c67ee0" uuid = "ef3ab10e-7fda-4108-b977-705223b18434" version = "0.3.0" [[Kelpie]] deps = ["EzXML"] git-tree-sha1 = "b8934c11c2890eb7ae2a62e7928cda3d6f4163ca" uuid = "1b112299-d6bc-44e2-912a-478f25731460" version = "0.2.1" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] git-tree-sha1 = "0a7ca818440ce8c70ebb5d42ac4ebf3205675f04" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" version = "0.6.4" [[KmerAnalysis]] deps = ["BioSequences", "Distributed", "ReadDatastores"] git-tree-sha1 = "9d62f1e2b9a7f63e5784905be6de9b52c7643a2b" uuid = "a20136b7-8e32-4c10-91d3-7060c0bd8ec7" version = "0.4.4" [[Knockout]] deps = ["JSExpr", "JSON", "Observables", "Test", "WebIO"] git-tree-sha1 = "deb74017e1061d76050ff68d219217413be4ef59" uuid = "bcebb21b-c2e3-54f8-a781-646b90f6d2cc" version = "0.2.5" [[Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] git-tree-sha1 = "7f0a89bd74c30aa7ff96c4bf1bc884c39663a621" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" version = "0.8.2" [[KrylovKit]] deps = ["LinearAlgebra", "Printf"] git-tree-sha1 = "49b0c1dd5c292870577b8f58c51072bd558febb9" uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" version = "0.5.4" [[LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.1+0" [[LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[LaTeXStrings]] git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.3.0" [[Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "Printf", "Requires"] git-tree-sha1 = "1a43be956d433b5d0321197150c2f94e16c0aaa0" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.15.16" [[LayoutPointers]] deps = ["ArrayInterface", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static"] git-tree-sha1 = "b67e749fb35530979839e7b4b606a97105fe4f1c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.10" [[LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" [[LazyModules]] git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" uuid = "8cdb02fc-e678-4876-92c5-9defec4f444e" version = "0.3.1" [[LevyArea]] deps = ["LinearAlgebra", "Random", "SpecialFunctions"] git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637" version = "1.0.0" [[LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" [[LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" [[LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" [[LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" [[Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" version = "3.2.2+1" [[Libgcrypt_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" version = "1.8.7+0" [[Libglvnd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] git-tree-sha1 = "7739f837d6447403596a75d19ed01fd08d6f56bf" uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" version = "1.3.0+3" [[Libgpg_error_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" version = "1.42.0+0" [[Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "42b62845d70a619f063a7da093d995ec8e15e778" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" version = "1.16.1+1" [[Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" version = "2.35.0+0" [[Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713" uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.4.0+0" [[Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.36.0+0" [[Libz]] deps = ["BufferedStreams", "Random", "Test"] git-tree-sha1 = "bf1510e80f1e0dba2297b05b59a3a7c8175a9517" uuid = "2ec943e9-cfe8-584d-b93d-64dcb6d567b7" version = "1.0.1" [[LightGraphs]] deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] git-tree-sha1 = "432428df5f360964040ed60418dd5601ecd240b6" uuid = "093fc24a-ae57-5d10-9952-331d41423f4d" version = "1.3.5" [[LightXML]] deps = ["Libdl", "XML2_jll"] git-tree-sha1 = "e129d9391168c677cd4800f5c0abb1ed8cb3794f" uuid = "9c8b4983-aa76-5018-a973-4c85ecc9e179" version = "0.9.0" [[LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] git-tree-sha1 = "f27132e551e959b3667d8c93eae90973225032dd" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" version = "7.1.1" [[LinearAlgebra]] deps = ["Libdl"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[LinearSolve]] deps = ["ArrayInterfaceCore", "DocStringExtensions", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SuiteSparse", "UnPack"] git-tree-sha1 = "92cc95b66f1459d230af9e67089eeeea6c6b2ee9" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" version = "1.23.0" [[LittleCMS_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg"] git-tree-sha1 = "110897e7db2d6836be22c18bffd9422218ee6284" uuid = "d3a379c0-f9a3-5b72-a4c0-6bf4d2e8af0f" version = "2.12.0+0" [[LogExpFunctions]] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "7c88f63f9f0eb5929f15695af9a4d7d3ed278a91" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.16" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[LoopVectorization]] deps = ["ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SIMDTypes", "SLEEFPirates", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"] git-tree-sha1 = "adc9421494fd93e31a18a66e49d79615ad6b2efa" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" version = "0.12.120" [[Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "5d494bc6e85c4c9b626ee0cab05daa4085486ab1" uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" version = "1.9.3+0" [[MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] git-tree-sha1 = "e595b205efd49508358f7dc670a940c790204629" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2022.0.0+0" [[MLBase]] deps = ["IterTools", "Random", "Reexport", "StatsBase"] git-tree-sha1 = "3bd9fd4baf19dfc1edf344bc578da7f565da2e18" uuid = "f0e99cf1-93fa-52ec-9ecc-5026115318e0" version = "0.9.0" [[MMTF]] deps = ["CodecZlib", "Downloads", "MsgPack"] git-tree-sha1 = "2af5e4051f50bd99755b84d8bf3547db073992f3" uuid = "259c3a9c-12c3-507f-b21f-68ecc40fcda4" version = "1.0.0" [[MacroTools]] deps = ["Markdown", "Random"] git-tree-sha1 = "3d3e902b31198a27340d0bf00d6ac452866021cf" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.9" [[ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" version = "0.1.8" [[MappedArrays]] git-tree-sha1 = "e8b359ef06ec72e8c030463fe02efe5527ee5142" uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" version = "0.4.1" [[MarchingCubes]] deps = ["StaticArrays"] git-tree-sha1 = "3bf4baa9df7d1367168ebf60ed02b0379ea91099" uuid = "299715c1-40a9-479a-aaf9-4a633d36f717" version = "0.1.3" [[Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] git-tree-sha1 = "e652a21eb0b38849ad84843a50dcbab93313e537" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" version = "1.6.1" [[MathProgBase]] deps = ["LinearAlgebra", "SparseArrays"] git-tree-sha1 = "9abbe463a1e9fc507f12a69e7f29346c2cdc472c" uuid = "fdba3010-5040-5b88-9595-932c9decdf73" version = "0.7.8" [[MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] git-tree-sha1 = "9f4f5a42de3300439cb8300236925670f844a555" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" version = "1.1.1" [[MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" [[Measures]] git-tree-sha1 = "e498ddeee6f9fdb4551ce855a46f54dbd900245f" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.1" [[MetaGraphs]] deps = ["Graphs", "JLD2", "Random"] git-tree-sha1 = "2af69ff3c024d13bde52b34a2a7d6887d4e7b438" uuid = "626554b9-1ddb-594c-aa3c-2596fe9399a5" version = "0.7.1" [[Missings]] deps = ["DataAPI"] git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" version = "1.0.2" [[Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[MosaicViews]] deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] git-tree-sha1 = "b34e3bc3ca7c94914418637cb10cc4d1d80d877d" uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389" version = "0.3.3" [[MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" [[MsgPack]] deps = ["Serialization"] git-tree-sha1 = "a8cbf066b54d793b9a48c5daa5d586cf2b5bd43d" uuid = "99f44e22-a591-53d1-9472-aa23ef4bd671" version = "1.1.0" [[MuladdMacro]] git-tree-sha1 = "c6190f9a7fc5d9d5915ab29f2134421b12d24a68" uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.2" [[MultipleTesting]] deps = ["Distributions", "SpecialFunctions", "StatsBase"] git-tree-sha1 = "94df14d821baa34662a1492b10615125cbebd47b" uuid = "f8716d33-7c4a-5097-896f-ce0ecbd3ef6b" version = "0.5.1" [[MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] git-tree-sha1 = "7008a3412d823e29d370ddc77411d593bd8a3d03" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" version = "0.9.1" [[Mustache]] deps = ["Printf", "Tables"] git-tree-sha1 = "1e566ae913a57d0062ff1af54d2697b9344b99cd" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" version = "1.0.14" [[MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] git-tree-sha1 = "4e675d6e9ec02061800d6cfb695812becbd03cdf" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" version = "1.0.4" [[NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] git-tree-sha1 = "50310f934e55e5ca3912fb941dec199b49ca9b68" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" version = "7.8.2" [[NLopt]] deps = ["MathOptInterface", "MathProgBase", "NLopt_jll"] git-tree-sha1 = "5a7e32c569200a8a03c3d55d286254b0321cd262" uuid = "76087f3c-5699-56af-9a33-bf431cd00edd" version = "0.6.5" [[NLopt_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "9b1f15a08f9d00cdb2761dcfa6f453f5d0d6f973" uuid = "079eb43e-fd8e-5478-9966-2cf3e3edb778" version = "2.7.1+0" [[NLsolve]] deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" version = "4.5.1" [[NaNMath]] git-tree-sha1 = "b086b7ea07f8e38cf122f5016af580881ac914fe" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "0.3.7" [[NearestNeighbors]] deps = ["Distances", "StaticArrays"] git-tree-sha1 = "0e353ed734b1747fc20cd4cba0edd9ac027eff6a" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" version = "0.4.11" [[Netpbm]] deps = ["FileIO", "ImageCore"] git-tree-sha1 = "18efc06f6ec36a8b801b23f076e3c6ac7c3bf153" uuid = "f09324ee-3d7c-5217-9330-fc30815ba969" version = "1.0.2" [[Nettle]] deps = ["Libdl", "Nettle_jll"] git-tree-sha1 = "6fa48cbae828267848ee32c1bb31d1652e210d7d" uuid = "49dea1ee-f6fa-5aa6-9a11-8816cee7d4b9" version = "1.0.0" [[Nettle_jll]] deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "eca63e3847dad608cfa6a3329b95ef674c7160b4" uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b" version = "3.7.2+0" [[NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" [[NonlinearSolve]] deps = ["ArrayInterfaceCore", "FiniteDiff", "ForwardDiff", "IterativeSolvers", "LinearAlgebra", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "UnPack"] git-tree-sha1 = "932bbdc22e6a2e0bae8dec35d32e4c8cb6c50f98" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" version = "0.3.21" [[Observables]] git-tree-sha1 = "fe29afdef3d0c4a8286128d4e45cc50621b1e43d" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" version = "0.4.0" [[OffsetArrays]] deps = ["Adapt"] git-tree-sha1 = "1ea784113a6aa054c5ebd95945fa5e52c2f378e7" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" version = "1.12.7" [[Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" [[OnlineStats]] deps = ["AbstractTrees", "Dates", "LinearAlgebra", "OnlineStatsBase", "OrderedCollections", "Random", "RecipesBase", "Statistics", "StatsBase"] git-tree-sha1 = "78feae582915781a235912de43280f98e6962a78" uuid = "a15396b6-48d5-5d58-9928-6d29437db91e" version = "1.5.13" [[OnlineStatsBase]] deps = ["AbstractTrees", "Dates", "LinearAlgebra", "OrderedCollections", "Statistics", "StatsBase"] git-tree-sha1 = "287bd0f7ee1cc2a73f08057a7a6fcfe0c23fe4b0" uuid = "925886fa-5bf2-5e8e-b522-a9147a512338" version = "1.4.9" [[OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" [[OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] git-tree-sha1 = "327f53360fdb54df7ecd01e96ef1983536d1e633" uuid = "52e1d378-f018-4a11-a4be-720524705ac7" version = "0.3.2" [[OpenEXR_jll]] deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] git-tree-sha1 = "923319661e9a22712f24596ce81c54fc0366f304" uuid = "18a262bb-aa17-5467-a713-aee519bc75cb" version = "3.1.1+0" [[OpenJpeg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libtiff_jll", "LittleCMS_jll", "Pkg", "libpng_jll"] git-tree-sha1 = "76374b6e7f632c130e78100b166e5a48464256f8" uuid = "643b3616-a352-519d-856d-80112ee9badc" version = "2.4.0+0" [[OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" [[OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "e60321e3f2616584ff98f0a4f18d98ae6f89bbb3" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" version = "1.1.17+0" [[OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] git-tree-sha1 = "7351d1daa3dad1bcf67c79d1ba34dd3f6136c9aa" uuid = "429524aa-4258-5aef-a3af-852621145aeb" version = "1.7.1" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[OrderedCollections]] git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.4.1" [[OrdinaryDiffEq]] deps = ["Adapt", "ArrayInterface", "ArrayInterfaceGPUArrays", "ArrayInterfaceStaticArrays", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] git-tree-sha1 = "c3b30b0c3ec02849cd30001e3de3f63e5842bbfd" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" version = "6.19.2" [[PCRE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "b2a7af664e098055a7529ad1a900ded962bca488" uuid = "2f80f16e-611a-54ab-bc61-aa92de5b98fc" version = "8.44.0+0" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" version = "0.11.16" [[PGFPlots]] deps = ["ColorBrewer", "ColorSchemes", "Colors", "Contour", "DataFrames", "DelimitedFiles", "Discretizers", "Distributed", "ImageMagick", "Images", "Printf", "Requires", "StatsBase", "TikzPictures"] git-tree-sha1 = "38d57a1222a13d5ffc8633c73fbf9bdf2739e6d2" uuid = "3b7a836e-365b-5785-a47d-02c71176b4aa" version = "3.4.2" [[PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] git-tree-sha1 = "e925a64b8585aa9f4e3047b8d2cdc3f0e79fd4e4" uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" version = "0.3.16" [[PaddedViews]] deps = ["OffsetArrays"] git-tree-sha1 = "03a7a85b76381a3d04c7a1656039197e70eda03d" uuid = "5432bcbf-9aad-5242-b902-cca2824c8663" version = "0.5.11" [[Parameters]] deps = ["OrderedCollections", "UnPack"] git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" version = "0.12.3" [[ParserCombinator]] deps = ["AutoHashEquals", "Printf"] git-tree-sha1 = "3a0e65d9a73e3bb6ed28017760a1664423d7e37c" uuid = "fae87a5f-d1ad-5cf0-8f61-c941e1580b46" version = "2.1.1" [[Parsers]] deps = ["Dates"] git-tree-sha1 = "0044b23da09b5608b4ecacb4e5e6c6332f833a7e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" version = "2.3.2" [[Pidfile]] deps = ["FileWatching", "Test"] git-tree-sha1 = "2d8aaf8ee10df53d0dfb9b8ee44ae7c04ced2b03" uuid = "fa939f87-e72e-5be4-a000-7fc836dbe307" version = "1.3.0" [[Pixman_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "b4f5d02549a10e20780a24fce72bea96b6329e29" uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.40.1+0" [[Pkg]] deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" [[PkgVersion]] deps = ["Pkg"] git-tree-sha1 = "a7a7e1a88853564e551e4eba8650f8c38df79b37" uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" version = "0.1.1" [[PlotThemes]] deps = ["PlotUtils", "Statistics"] git-tree-sha1 = "8162b2f8547bc23876edd0c5181b27702ae58dce" uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" version = "3.0.0" [[PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "Statistics"] git-tree-sha1 = "9888e59493658e476d3073f1ce24348bdc086660" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.3.0" [[Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] git-tree-sha1 = "0a0da27969e8b6b2ee67c112dcf7001a659049a0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" version = "1.31.4" [[PoissonRandom]] deps = ["Random"] git-tree-sha1 = "9ac1bb7c15c39620685a3a7babc0651f5c64c35b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.1" [[Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"] git-tree-sha1 = "94e20822bd7427b1b1b843a3980003f5d5e8696b" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" version = "0.6.14" [[PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] git-tree-sha1 = "cf82af4e114b0da31c4896aef6c5b8be3fe0916d" uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" version = "0.1.7" [[Polynomials]] deps = ["LinearAlgebra", "MutableArithmetics", "RecipesBase"] git-tree-sha1 = "d6de04fd2559ecab7e9a683c59dcbc7dbd20581a" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" version = "3.1.5" [[PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "a6062fe4063cdafe78f4a0a81cfffb89721b30e7" uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" version = "1.4.2" [[PopGen]] deps = ["Clustering", "DataFrames", "Distributions", "MultipleTesting", "MultivariateStats", "PooledArrays", "PopGenCore", "ProgressMeter", "Random", "Reexport", "StatsBase"] git-tree-sha1 = "f696f6c338adc3d328cd8e9b52fabb2c84fe5db3" uuid = "af524d12-c74b-11e9-22a8-3b091653023f" version = "0.8.0" [[PopGenCore]] deps = ["CSV", "CodecZlib", "DataFrames", "PooledArrays", "Random", "StaticArrays", "StatsBase", "VariantCallFormat"] git-tree-sha1 = "e107a2412c47098cfe23d0726962d03c3ed64495" uuid = "45b36091-5ef7-4b08-b448-aaf24c763a14" version = "0.5.1" [[Poppler_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "OpenJpeg_jll", "Pkg", "libpng_jll"] git-tree-sha1 = "02148a0cb2532f22c0589ceb75c110e168fb3d1f" uuid = "9c32591e-4766-534b-9725-b71a8799265b" version = "21.9.0+0" [[PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" [[PreallocationTools]] deps = ["Adapt", "ArrayInterfaceCore", "ForwardDiff"] git-tree-sha1 = "ba66bf03b84ca3bd0a26aa2bbe96cd9df2f4f9b9" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" version = "0.4.0" [[Preferences]] deps = ["TOML"] git-tree-sha1 = "47e5f437cc0e7ef2ce8406ce1e7e24d44915f88d" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.3.0" [[PrettyTables]] deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"] git-tree-sha1 = "dfb54c4e414caa595a1f2ed759b160f5a3ddcba5" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" version = "1.3.1" [[Primes]] deps = ["IntegerMathUtils"] git-tree-sha1 = "311a2aa90a64076ea0fac2ad7492e914e6feeb81" uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" version = "0.5.3" [[Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" [[Profile]] deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" [[ProgressMeter]] deps = ["Distributed", "Printf"] git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.7.2" [[ProtoBuf]] deps = ["Logging", "protoc_jll"] git-tree-sha1 = "5bb5eb83db702376abe5fb2ef0739b08da3ab461" uuid = "3349acd9-ac6a-5e09-bcdb-63829b23a429" version = "0.11.5" [[QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce" uuid = "4b34888f-f399-49d4-9bb3-47ed5cae4e65" version = "1.0.0" [[Qt5Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"] git-tree-sha1 = "c6c0f690d0cc7caddb74cef7aa847b824a16b256" uuid = "ea2cea3b-5b76-57ae-a6ef-0a8af62496e1" version = "5.15.3+1" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "78aadffb3efd2155af139781b8a8df1ef279ea39" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.4.2" [[QuantEcon]] deps = ["DSP", "DataStructures", "Distributions", "FFTW", "Graphs", "LinearAlgebra", "Markdown", "NLopt", "Optim", "Pkg", "Primes", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Test"] git-tree-sha1 = "0069c628273c7a3b793383c7dc5f9744d31dfe28" uuid = "fcd29c91-0bd7-5a09-975d-7ac3f643a60c" version = "0.16.4" [[Quaternions]] deps = ["DualNumbers", "LinearAlgebra", "Random"] git-tree-sha1 = "b327e4db3f2202a4efafe7569fcbe409106a1f75" uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0" version = "0.5.6" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[Random]] deps = ["Serialization"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[Random123]] deps = ["Random", "RandomNumbers"] git-tree-sha1 = "afeacaecf4ed1649555a19cb2cad3c141bbc9474" uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.5.0" [[RandomNumbers]] deps = ["Random", "Requires"] git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" version = "1.5.3" [[RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" version = "0.3.2" [[Ratios]] deps = ["Requires"] git-tree-sha1 = "dc84268fe0e3335a62e315a3a7cf2afa7178a734" uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" version = "0.4.3" [[ReadDatastores]] deps = ["BioSequences", "FASTX"] git-tree-sha1 = "72f9df4854d3ee73097ce9f89871557848692541" uuid = "70a005b8-9d8a-11e9-0d98-c909fa2e52d2" version = "0.4.0" [[RealDot]] deps = ["LinearAlgebra"] git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" version = "0.1.0" [[RecipesBase]] git-tree-sha1 = "6bf3f380ff52ce0832ddd3a2a7b9538ed1bcca7d" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.2.1" [[RecipesPipeline]] deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase"] git-tree-sha1 = "2690681814016887462cf5ac37102b51cd9ec781" uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.2" [[RecursiveArrayTools]] deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "ZygoteRules"] git-tree-sha1 = "4ce7584604489e537b2ab84ed92b4107d03377f0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" version = "2.31.2" [[RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "StrideArraysCore", "TriangularSolve"] git-tree-sha1 = "3ee71214057e29a8466f5d70cfe745236aa1d9d7" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" version = "0.2.11" [[Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" [[RegionTrees]] deps = ["IterTools", "LinearAlgebra", "StaticArrays"] git-tree-sha1 = "4618ed0da7a251c7f92e869ae1a19c74a7d2a7f9" uuid = "dee08c22-ab7f-5625-9660-a9af2021b33f" version = "0.3.2" [[RelocatableFolders]] deps = ["SHA", "Scratch"] git-tree-sha1 = "22c5201127d7b243b9ee1de3b43c408879dff60f" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" version = "0.3.0" [[Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" [[ResettableStacks]] deps = ["StaticArrays"] git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" version = "1.1.1" [[Rmath]] deps = ["Random", "Rmath_jll"] git-tree-sha1 = "bf3188feca147ce108c76ad82c2792c57abe7b1f" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.0" [[Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "68db32dff12bb6127bac73c209881191bf0efbb7" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.3.0+0" [[Roots]] deps = ["CommonSolve", "Printf", "Setfield"] git-tree-sha1 = "50f945fb7d7fdece03bbc76ff1ab96170f64a892" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" version = "2.0.2" [[Rotations]] deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays", "Statistics"] git-tree-sha1 = "3177100077c68060d63dd71aec209373c3ec339b" uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc" version = "1.3.1" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" [[SIMD]] git-tree-sha1 = "7dbc15af7ed5f751a82bf3ed37757adf76c32402" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" version = "3.4.1" [[SIMDDualNumbers]] deps = ["ForwardDiff", "IfElse", "SLEEFPirates", "VectorizationBase"] git-tree-sha1 = "dd4195d308df24f33fb10dde7c22103ba88887fa" uuid = "3cdde19b-5bb0-4aaf-8931-af3e248e098b" version = "0.1.1" [[SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" [[SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] git-tree-sha1 = "7ee0e13ac7cd77f2c0e93bff8c40c45f05c77a5a" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.33" [[ScanByte]] deps = ["Libdl", "SIMD"] git-tree-sha1 = "2436b15f376005e8790e318329560dcc67188e84" uuid = "7b38b023-a4d7-4c5e-8d43-3f3097f304eb" version = "0.3.3" [[SciMLBase]] deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "RecipesBase", "RecursiveArrayTools", "StaticArraysCore", "Statistics", "Tables"] git-tree-sha1 = "d48bd7ac5500dd45aac2d4a2bd1da8baedb4a7e1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" version = "1.44.1" [[ScikitLearnBase]] deps = ["LinearAlgebra", "Random", "Statistics"] git-tree-sha1 = "7877e55c1523a4b336b433da39c8e8c08d2f221f" uuid = "6e75b9c4-186b-50bd-896f-2d2496a4843e" version = "0.5.0" [[Scratch]] deps = ["Dates"] git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" uuid = "6c6a2e73-6563-6170-7368-637461726353" version = "1.1.1" [[SentinelArrays]] deps = ["Dates", "Random"] git-tree-sha1 = "db8481cf5d6278a121184809e9eb1628943c7704" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" version = "1.3.13" [[SequenceVariation]] deps = ["BioAlignments", "BioGenerics", "BioSequences", "BioSymbols"] git-tree-sha1 = "203de44c8b6d4a79a91fe40456dcd01cc93d6dca" uuid = "eef6e190-9969-4f06-a38f-35a110a8fdc8" version = "0.1.1" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" [[Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "Requires"] git-tree-sha1 = "77172cadd2fdfa0c84c87e3a01215a4ca7723310" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" version = "1.0.0" [[SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" [[ShiftedArrays]] git-tree-sha1 = "22395afdcf37d6709a5a0766cc4a5ca52cb85ea0" uuid = "1277b4bf-5013-50f5-be3d-901d8477a67a" version = "1.0.0" [[Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" [[SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.4" [[SimpleWeightedGraphs]] deps = ["Graphs", "LinearAlgebra", "Markdown", "SparseArrays", "Test"] git-tree-sha1 = "a6f404cc44d3d3b28c793ec0eb59af709d827e4e" uuid = "47aef6b3-ad0c-573a-a1e2-d07658019622" version = "1.2.1" [[Sixel]] deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"] git-tree-sha1 = "8fb59825be681d451c246a795117f317ecbcaa28" uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" version = "0.1.2" [[Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[SortingAlgorithms]] deps = ["DataStructures"] git-tree-sha1 = "b3363d7460f7d098ca0912c69b082f75625d7508" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" version = "1.0.1" [[SparseArrays]] deps = ["LinearAlgebra", "Random"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SparseDiffTools]] deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArrays", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays", "VertexSafeGraphs"] git-tree-sha1 = "32025c052719c6353f22f7c6de7d7b97b7cd2c88" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" version = "1.24.0" [[SpecialFunctions]] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "2.1.7" [[StableRNGs]] deps = ["Random", "Test"] git-tree-sha1 = "b57c4216b6c163a3a9d674f6b9f7b99cdccdb959" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "0.1.2" [[StackViews]] deps = ["OffsetArrays"] git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c" uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" version = "0.1.1" [[Static]] deps = ["IfElse"] git-tree-sha1 = "f94f9d627ba3f91e41a815b9f9f977d729e2e06f" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" version = "0.7.6" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] git-tree-sha1 = "23368a3313d12a2326ad0035f0db0c0966f438ef" uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.5.2" [[StaticArraysCore]] git-tree-sha1 = "66fe9eb253f910fe8cf161953880cfdaef01cdf0" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.0.1" [[Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [[StatsAPI]] deps = ["LinearAlgebra"] git-tree-sha1 = "8d7530a38dbd2c397be7ddd01a424e4f411dcc41" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" version = "1.2.2" [[StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] git-tree-sha1 = "0005d75f43ff23688914536c5e9d5ac94f8077f7" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.33.20" [[StatsFuns]] deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] git-tree-sha1 = "5783b877201a82fc0014cbf381e7e6eb130473a4" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.0.1" [[StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] git-tree-sha1 = "4352d5badd1bc8bf0a8c825e886fa1eda4f0f967" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" version = "0.6.30" [[StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] git-tree-sha1 = "b422791c9db86c777cf5887d768a8bcbfffc43eb" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.0" [[SteadyStateDiffEq]] deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase"] git-tree-sha1 = "fa04638e98850332978467a085e58aababfa203a" uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" version = "1.8.0" [[StochasticDiffEq]] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] git-tree-sha1 = "a518b59fe62a07e007c8f7913e14e2fae697c8a7" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" version = "6.51.0" [[StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "ThreadingUtilities"] git-tree-sha1 = "ac730bd978bf35f9fe45daa0bd1f51e493e97eb4" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" version = "0.3.15" [[StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "50ccd5ddb00d19392577902f0079267a72c5ab04" uuid = "69024149-9ee7-55f6-a4c4-859efe599b68" version = "0.3.5" [[StructArrays]] deps = ["Adapt", "DataAPI", "StaticArrays", "Tables"] git-tree-sha1 = "ec47fb6069c57f1cee2f67541bf8f23415146de7" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" version = "0.6.11" [[StructTypes]] deps = ["Dates", "UUIDs"] git-tree-sha1 = "d24a825a95a6d98c385001212dc9020d609f2d4f" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" version = "1.8.1" [[SubstitutionModels]] deps = ["BioSymbols", "LinearAlgebra", "StaticArrays"] git-tree-sha1 = "5e18123c57ff933efff915f4b44eb5d46a4089d1" uuid = "8365b1bb-bd83-58ee-a267-f2965fc81c73" version = "0.5.0" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" [[Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SparseArrays", "Sundials_jll"] git-tree-sha1 = "6549d3b1b5cf86446949c62616675588159ea2fb" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" version = "4.9.4" [[Sundials_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] git-tree-sha1 = "013ff4504fc1d475aa80c63b455b6b3a58767db2" uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" version = "5.2.0+1" [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" [[TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" version = "1.2.0" [[TableTraits]] deps = ["IteratorInterfaceExtensions"] git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] git-tree-sha1 = "5ce79ce186cc678bbb5c5681ca3379d1ddae11a1" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" version = "1.7.0" [[Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" [[TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" version = "0.1.1" [[Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[TextWrap]] git-tree-sha1 = "9250ef9b01b66667380cf3275b3f7488d0e25faf" uuid = "b718987f-49a8-5099-9789-dcd902bef87d" version = "1.0.1" [[ThreadingUtilities]] deps = ["ManualMemory"] git-tree-sha1 = "f8629df51cab659d70d2e5618a430b4d3f37f2c3" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" version = "0.5.0" [[TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"] git-tree-sha1 = "fcf41697256f2b759de9380a7e8196d6516f0310" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" version = "0.6.0" [[TikzPictures]] deps = ["LaTeXStrings", "Poppler_jll"] git-tree-sha1 = "40d1559df48a5316eb66ad29ac734db6829e433d" uuid = "37f6aa50-8035-52d0-81c2-5a1d08754b2d" version = "3.2.0" [[TiledIteration]] deps = ["OffsetArrays"] git-tree-sha1 = "5683455224ba92ef59db72d10690690f4a8dc297" uuid = "06e1c1a7-607b-532d-9fad-de7d9aa2abac" version = "0.3.1" [[TranscodingStreams]] deps = ["Random", "Test"] git-tree-sha1 = "216b95ea110b5972db65aa90f88d8d89dcb8851c" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.9.6" [[TreeViews]] deps = ["Test"] git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6" uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7" version = "0.3.0" [[TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] git-tree-sha1 = "caf797b6fccbc0d080c44b4cb2319faf78c9d058" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" version = "0.1.12" [[Twiddle]] git-tree-sha1 = "29509c4862bfb5da9e76eb6937125ab93986270a" uuid = "7200193e-83a8-5a55-b20d-5d36d44a0795" version = "1.1.2" [[TwoBit]] deps = ["BioGenerics", "BioSequences"] git-tree-sha1 = "adea0d50015bad1698e08a7500185fff0795f638" uuid = "75842c30-9b2d-11e9-3f58-f17fe2b89951" version = "0.1.0" [[URIParser]] deps = ["Unicode"] git-tree-sha1 = "53a9f49546b8d2dd2e688d216421d050c9a31d0d" uuid = "30578b45-9adc-5946-b283-645ec420af67" version = "0.4.1" [[URIs]] git-tree-sha1 = "e59ecc5a41b000fa94423a578d29290c7266fc10" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" version = "1.4.0" [[UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" [[UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" version = "1.0.2" [[Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" [[UnicodeFun]] deps = ["REPL"] git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" [[UnicodePlots]] deps = ["ColorSchemes", "ColorTypes", "Contour", "Crayons", "Dates", "FileIO", "FreeTypeAbstraction", "LazyModules", "LinearAlgebra", "MarchingCubes", "NaNMath", "Printf", "SparseArrays", "StaticArrays", "StatsBase", "Unitful"] git-tree-sha1 = "a2a83d67213fceb792b5f265b939e0049a26c76d" uuid = "b8865327-cd53-5732-bb35-84acbb429228" version = "3.0.4" [[Unitful]] deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "b649200e887a487468b71821e2644382699f1b0f" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.11.0" [[Unzip]] git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" version = "0.1.2" [[VariantCallFormat]] deps = ["Automa", "BGZFStreams", "BioCore", "BufferedStreams"] git-tree-sha1 = "3f459ba763786964d472558c4b223bd332e89f24" uuid = "28eba6e3-a997-4ad9-87c6-d933b8bca6c1" version = "0.5.3" [[VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] git-tree-sha1 = "81d19dae338dd4cf3ecd6331fb4763a1002f9580" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" version = "0.21.43" [[VertexSafeGraphs]] deps = ["Graphs"] git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" version = "0.2.0" [[Wayland_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] git-tree-sha1 = "3e61f0b86f90dacb0bc0e73a0c5a83f6a8636e23" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" version = "1.19.0+0" [[Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" version = "1.25.0+0" [[WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" version = "1.4.2" [[WebIO]] deps = ["AssetRegistry", "Base64", "Distributed", "FunctionalCollections", "JSON", "Logging", "Observables", "Pkg", "Random", "Requires", "Sockets", "UUIDs", "WebSockets", "Widgets"] git-tree-sha1 = "a8bbcd0b08061bba794c56fb78426e96e114ae7f" uuid = "0f1e0344-ec1d-5b48-a673-e5cf874b6c29" version = "0.8.18" [[WebSockets]] deps = ["Base64", "Dates", "HTTP", "Logging", "Sockets"] git-tree-sha1 = "f91a602e25fe6b89afc93cf02a4ae18ee9384ce3" uuid = "104b5d7c-a370-577a-8038-80a2059c5097" version = "1.5.9" [[Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" version = "0.6.6" [[WinReg]] deps = ["Test"] git-tree-sha1 = "808380e0a0483e134081cc54150be4177959b5f4" uuid = "1b915085-20d7-51cf-bf83-8f477d6f5128" version = "0.3.1" [[WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" version = "0.5.5" [[XAM]] deps = ["Automa", "BGZFStreams", "BioAlignments", "BioGenerics", "BioSequences", "GenomicFeatures", "Indexes", "Printf", "TranscodingStreams"] git-tree-sha1 = "6689a68552e7b91078dd2022946477d68e8a4cf8" repo-rev = "operations-fix" repo-url = "https://github.com/MillironX/XAM.jl" uuid = "d759349c-bcba-11e9-07c2-5b90f8f05f7c" version = "0.2.7" [[XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "58443b63fb7e465a8a7210828c91c08b92132dff" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" version = "2.9.14+0" [[XMLDict]] deps = ["EzXML", "IterTools", "OrderedCollections"] git-tree-sha1 = "d9a3faf078210e477b291c79117676fca54da9dd" uuid = "228000da-037f-5747-90a9-8195ccbf91a5" version = "0.4.1" [[XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" version = "1.1.34+0" [[XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "a921669cd9a45c23031fd4eb904f5cc3d20de415" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" version = "5.2.5+2" [[Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" version = "1.0.9+4" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" version = "1.1.3+4" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" version = "1.3.4+4" [[Xorg_libXfixes_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" version = "5.0.3+4" [[Xorg_libXi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" version = "1.7.10+4" [[Xorg_libXinerama_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" version = "1.1.4+4" [[Xorg_libXrandr_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" version = "1.5.2+4" [[Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" version = "0.1.0+3" [[Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" version = "1.13.0+3" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] git-tree-sha1 = "926af861744212db0eb001d9e40b5d16292080b2" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" version = "1.1.0+4" [[Xorg_xcb_util_image_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" version = "0.4.0+1" [[Xorg_xcb_util_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" version = "0.4.0+1" [[Xorg_xcb_util_keysyms_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" version = "0.4.0+1" [[Xorg_xcb_util_renderutil_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" version = "0.3.9+1" [[Xorg_xcb_util_wm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" version = "0.4.1+1" [[Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxkbfile_jll"] git-tree-sha1 = "4bcbf660f6c2e714f87e960a171b119d06ee163b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" version = "1.4.2+4" [[Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xkbcomp_jll"] git-tree-sha1 = "5c8424f8a67c3f2209646d4425f3d415fee5931d" uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" version = "1.4.0+3" [[YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] git-tree-sha1 = "3c6e8b9f5cdaaa21340f841653942e1a6b6561e5" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" version = "0.4.7" [[ZMQ]] deps = ["FileWatching", "Sockets", "ZeroMQ_jll"] git-tree-sha1 = "fc68e8a3719166950a0f3e390a14c7302c48f8de" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" version = "1.2.1" [[ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "libsodium_jll"] git-tree-sha1 = "fe5c65a526f066fb3000da137d5785d9649a8a47" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" version = "4.3.4+0" [[Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.2+0" [[Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] git-tree-sha1 = "3cfdb31b517eec4173584fba2b1aa65daad46e09" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" version = "0.6.41" [[ZygoteRules]] deps = ["MacroTools"] git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" uuid = "700de1a5-db45-46bc-99cf-38207098b444" version = "0.2.2" [[libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" version = "3.4.0+0" [[libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.15.1+0" [[libblastrampoline_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "576c27f2c23add3ce8f10717d72fbaee6fe120e9" uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "3.1.0+2" [[libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" version = "2.0.2+0" [[libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" version = "1.6.38+0" [[libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "78736dab31ae7a53540a6b752efc61f77b304c5b" uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" version = "1.8.6+1" [[libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" version = "1.0.20+0" [[libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+1" [[nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" [[p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" [[protoc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "cd74748e54f76134ddf000a6e3022901485c2d26" uuid = "c7845625-083e-5bbe-8504-b32d602b7110" version = "3.19.4+0" [[x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" version = "2021.5.5+0" [[x265_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" version = "3.5.0+0" [[xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" version = "0.9.1+5"