From 1526bf85d6c5b32f614ad55717032792386e52ac Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Thu, 30 Dec 2021 12:41:28 -0600
Subject: [PATCH] Add lots more options for Nextflow+SCINet

Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
---
 dot_nextflow/config.tmpl | 74 ++++++++++++++++++++++++++++++++++------
 1 file changed, 63 insertions(+), 11 deletions(-)

diff --git a/dot_nextflow/config.tmpl b/dot_nextflow/config.tmpl
index 1715f6b..3dd22a5 100644
--- a/dot_nextflow/config.tmpl
+++ b/dot_nextflow/config.tmpl
@@ -2,23 +2,75 @@ tower {
   enabled = true
   accessToken = '{{ (bitwarden "item" "d41ac952-d8b5-4d20-a42a-ad8e0174d152").login.password }}'
 }
-{{ if (eq .cluster "scinet") }}
+{{- if (eq .cluster "scinet") -}}
+params {
+  {{ if (eq .chezmoi.hostname "ceres") }}
+  max_memory = 768.GB
+  max_cpus   = 40
+  max_time   = 1000.h
+  {{ end }}
+  {{ if (or (eq .chezmoi.hostname "Atlas-login-1") (eq .chezmoi.hostname "Atlas-login-2")) }}
+  max_memory = 1539.GB
+  max_cpus   = 24
+  max_time   = 14.d
+  {{ end }}
+}
+
 process {
   scratch        = true
   executor       = 'slurm'
   clusterOptions = '--account=fabadru'
   {{ if (or (eq .chezmoi.hostname "Atlas-login-1") (eq .chezmoi.hostname "Atlas-login-2")) }}
-    withLabel: process_high_memory {
-      queue      = 'bigmem'
-    }
+  cpus   = 12
+  memory = 192.GB
+  time   = 7.d
+  withLabel: process_high_memory {
+    queue      = 'bigmem'
+    memory     = 1536.GB
+  }
+  withLabel: process_long {
+    time   = 14.d
+  }
+  withLabel: process_medium {
+    cpus   = 12
+    memory = 192.GB
+    time   = 7.d
+  }
+  withLabel: process_high {
+    cpus   = 24
+    memory = 384.GB
+    time   = 14.d
+  }
   {{ end }}
   {{ if (eq .chezmoi.hostname "ceres") }}
-    withLabel: process_high_memory {
-      queue      = 'mem'
-    }
-    withLabel: process_long {
-      queue      = 'long'
-    }
+  queue  = 'short'
+  cpus   = 18
+  memory = 54.GB
+  time   = 24.h
+  withLabel: process_high_memory {
+    queue  = 'mem'
+    memory = 640.GB
+  }
+  withLabel: process_long {
+    queue = 'long'
+    time  = 21.d
+  }
+  withLabel: process_medium {
+    queue = 'medium'
+    cpus  = 36
+    time  = 7.d
+  }
+  withLabel: process_high {
+    queue = 'long'
+    cpus  = 36
+    time  = 21.d
+  }
   {{ end }}
+  withLabel: process_low {
+    cpus   = 2
+    memory = 4.GB
+    time   = 1.h
+    {{ if (eq .chezmoi.hostname "ceres") }}queue = 'short'{{ end }}
+  }
 }
-{{ end }}
+{{- end -}}