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Add lots more options for Nextflow+SCINet

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Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
This commit is contained in:
Thomas A. Christensen II 2021-12-30 12:41:28 -06:00
parent 838a9741a9
commit 1526bf85d6
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 63 additions and 11 deletions
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56
dot_nextflow/config.tmpl
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@ -2,23 +2,75 @@ tower {
enabled = true enabled = true
accessToken = '{{ (bitwarden "item" "d41ac952-d8b5-4d20-a42a-ad8e0174d152").login.password }}' accessToken = '{{ (bitwarden "item" "d41ac952-d8b5-4d20-a42a-ad8e0174d152").login.password }}'
} }
{{ if (eq .cluster "scinet") }} {{- if (eq .cluster "scinet") -}}
params {
{{ if (eq .chezmoi.hostname "ceres") }}
max_memory = 768.GB
max_cpus = 40
max_time = 1000.h
{{ end }}
{{ if (or (eq .chezmoi.hostname "Atlas-login-1") (eq .chezmoi.hostname "Atlas-login-2")) }}
max_memory = 1539.GB
max_cpus = 24
max_time = 14.d
{{ end }}
}
process { process {
scratch = true scratch = true
executor = 'slurm' executor = 'slurm'
clusterOptions = '--account=fabadru' clusterOptions = '--account=fabadru'
{{ if (or (eq .chezmoi.hostname "Atlas-login-1") (eq .chezmoi.hostname "Atlas-login-2")) }} {{ if (or (eq .chezmoi.hostname "Atlas-login-1") (eq .chezmoi.hostname "Atlas-login-2")) }}
cpus = 12
memory = 192.GB
time = 7.d
withLabel: process_high_memory { withLabel: process_high_memory {
queue = 'bigmem' queue = 'bigmem'
memory = 1536.GB
}
withLabel: process_long {
time = 14.d
}
withLabel: process_medium {
cpus = 12
memory = 192.GB
time = 7.d
}
withLabel: process_high {
cpus = 24
memory = 384.GB
time = 14.d
} }
{{ end }} {{ end }}
{{ if (eq .chezmoi.hostname "ceres") }} {{ if (eq .chezmoi.hostname "ceres") }}
queue = 'short'
cpus = 18
memory = 54.GB
time = 24.h
withLabel: process_high_memory { withLabel: process_high_memory {
queue = 'mem' queue = 'mem'
memory = 640.GB
} }
withLabel: process_long { withLabel: process_long {
queue = 'long' queue = 'long'
time = 21.d
}
withLabel: process_medium {
queue = 'medium'
cpus = 36
time = 7.d
}
withLabel: process_high {
queue = 'long'
cpus = 36
time = 21.d
} }
{{ end }} {{ end }}
withLabel: process_low {
cpus = 2
memory = 4.GB
time = 1.h
{{ if (eq .chezmoi.hostname "ceres") }}queue = 'short'{{ end }}
} }
{{ end }} }
{{- end -}}