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Add Nextflow configuration options for SCINet

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Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
This commit is contained in:
Thomas A. Christensen II 2021-12-02 10:59:25 -06:00
parent b0a0a4a9fb
commit 6057729c59
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 19 additions and 0 deletions
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19
dot_nextflow/config.tmpl
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@ -2,3 +2,22 @@ tower {
enabled = true enabled = true
accessToken = '{{ (bitwarden "item" "d41ac952-d8b5-4d20-a42a-ad8e0174d152").login.password }}' accessToken = '{{ (bitwarden "item" "d41ac952-d8b5-4d20-a42a-ad8e0174d152").login.password }}'
} }
{{ if (eq .cluster "scinet") }}
process {
executor = 'slurm'
clusterOptions = '--account=fabadru'
{{ if (or (eq .chezmoi.hostname "Atlas-login-1") (eq .chezmoi.hostname "Atlas-login-2")) }}
withLabel: process_high_memory {
queue = 'bigmem'
}
{{ end }}
{{ if (eq .chezmoi.hostname "ceres") }}
withLabel: process_high_memory {
queue = 'mem'
}
withLabel: process_long {
queue = 'long'
}
{{ end }}
}
{{ end }}