diff --git a/dot_nextflow/config.tmpl b/dot_nextflow/config.tmpl index f4bc612..12db9cf 100644 --- a/dot_nextflow/config.tmpl +++ b/dot_nextflow/config.tmpl @@ -4,99 +4,7 @@ tower { accessToken = '{{ (bitwarden "item" "d41ac952-d8b5-4d20-a42a-ad8e0174d152").login.password }}' } {{ end }} -profiles { - aahz { - params { - config_profile_description = 'KSU VDL Molecular NGS Big Server profile' - config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>' - config_profile_url = null - max_memory = 745.GB - max_cpus = 78 - max_time = 7.d - } - singularity { - enabled = true - autoMounts = true - envWhitelist = 'NCBI_API_KEY' - } - process { - executor = 'local' - } - } - atlas { - params { - config_profile_description = 'Mississippi State University Atlas Cluster profile' - config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>' - config_profile_url = 'https://www.hpc.msstate.edu/computing/atlas/' - - max_memory = 1539.GB - max_cpus = 24 - max_time = 14.d - } - singularity { - enabled = true - autoMounts = true - envWhitelist = 'NCBI_API_KEY' - } - process { - scratch = true - executor = 'slurm' - clusterOptions = '--account=fabadru' - - withLabel: process_high_memory { - queue = 'bigmem' - } - } - } - ceres { - params { - config_profile_description = 'USDA ARS SCInet Ceres Cluster profile' - config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>' - config_profile_url = 'https://scinet.usda.gov/guide/ceres/#partitions-or-queues' - - max_memory = 768.GB - max_cpus = 40 - max_time = 1000.h - } - singularity { - enabled = true - autoMounts = true - envWhitelist = 'NCBI_API_KEY' - } - process { - scratch = true - executor = 'slurm' - queue = 'short' - - withLabel: process_high_memory { - queue = 'mem' - } - withLabel: process_long { - queue = 'long' - } - withLabel: process_medium { - queue = 'medium' - } - } - } - tananda { - params { - config_profile_description = 'KSU VDL Molecular NGS Desktop profile' - config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>' - config_profile_url = null - - max_memory = 14.GB - max_cpus = 12 - max_time = 4.h - } - docker { - enabled = true - userEmulation = true - envWhitelist = 'NCBI_API_KEY' - } - process { - executor = 'local' - } - } +conda { + useMamba = true }