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Author SHA1 Message Date
Thomas A. Christensen II
6057729c59
Add Nextflow configuration options for SCINet 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-12-02 10:59:25 -06:00
Thomas A. Christensen II
fbb0dc81ea
Fix incorrect path for Singularity cache 2021-11-17 12:45:06 -06:00
Thomas A. Christensen II
b0a0a4a9fb Update private_dot_git-credentials.tmpl 2021-11-10 14:21:55 -06:00
Thomas A. Christensen II
4f64e9f1a3 Add private_dot_git-credentials.tmpl 2021-11-10 14:19:32 -06:00
Thomas A. Christensen II
494d813dec
Fix exporting the Singularity cache directory 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 09:07:44 -05:00
Thomas A. Christensen II
e394d9a026
Switch execution order of profile and rc 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 08:49:52 -05:00
Thomas A. Christensen II
03f75b29c3
Disable instant prompt for SCINet 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 08:44:01 -05:00
Thomas A. Christensen II
b4d29be2b4 Rename executable_dot_zshrc to executable_dot_zshrc.tmpl 2021-10-20 08:42:17 -05:00
Thomas A. Christensen II
397a2f9ac8
Simplify fpath workaround 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 08:37:38 -05:00
Thomas A. Christensen II
219c25e0f0
Add in workaround for fpath 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 08:27:30 -05:00
Thomas A. Christensen II
0e971860ad Rename dot_zshenv to dot_zshenv.tmpl 2021-10-20 08:06:01 -05:00
Thomas A. Christensen II
734240b1cb
Quit sourcing global definitions 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 08:00:47 -05:00
Thomas A. Christensen II
0f2023f999
Switch to more portable zsh switching 
Older versions of `which` apparantly are more verbose and list extra text
in addition to the path. Get rid of that nonsense

Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 07:56:22 -05:00
Thomas A. Christensen II
2dabcd4e11
Try to bring the profile PATH into bash 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 07:46:01 -05:00
Thomas A. Christensen II
363a93030e
Make .bash_profile shellcheck compliant 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 07:27:45 -05:00
Thomas A. Christensen II
d508b92efd
Make profile POSIX compliant 
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
 2021-10-20 07:24:24 -05:00
Thomas A. Christensen II
506830ab9b Update dot_envvar.tmpl 2021-10-12 17:26:38 -05:00
Thomas A. Christensen II
1a1a4cf05e Update executable_dot_bashrc.tmpl 2021-10-12 17:23:04 -05:00
Thomas A. Christensen II
72857ec291 Update executable_dot_zshrc 2021-10-12 17:22:28 -05:00
Thomas A. Christensen II
58344c1e30 Update dot_envvar.tmpl 2021-10-12 17:02:27 -05:00
Thomas A. Christensen II
3fd743908c Update dot_screenrc 2021-10-12 16:57:31 -05:00
Thomas A. Christensen II
a961680627 Update dot_envvar.tmpl 2021-10-12 16:54:31 -05:00
Thomas A. Christensen II
9ca0192356 Rename dot_envvar to dot_envvar.tmpl 2021-10-12 16:34:21 -05:00
Thomas A. Christensen II
8e2ff856c0 Update dot_profile 2021-10-12 16:30:54 -05:00
Thomas A. Christensen II
08aba126fc Update executable_dot_Renviron 2021-10-12 16:27:58 -05:00
Thomas A. Christensen II
f06d6797c5 Update executable_dot_bashrc.tmpl 2021-10-12 16:17:03 -05:00
Thomas A. Christensen II
1368bf11a7 Rename executable_dot_bashrc to executable_dot_bashrc.tmpl 2021-10-12 16:05:10 -05:00
Thomas A. Christensen II
addb561808 Update executable_dot_zshrc 2021-10-12 15:23:33 -05:00
Thomas A. Christensen II
21a28dd90b Update executable_dot_zshrc 2021-10-12 15:18:38 -05:00
Thomas A. Christensen II
4f2e31565e Add env_parallel support to bash 2021-10-11 09:47:50 -05:00
Thomas A. Christensen II
722416e43b Add env_parallel support to zsh 2021-10-11 09:40:23 -05:00
Thomas A. Christensen II
a9f8e40cfd Update executable_dot_zshrc 2021-09-01 12:35:54 -05:00
Thomas A. Christensen II
56db205f7d Update dot_envvar 2021-09-01 12:27:15 -05:00
Thomas A. Christensen II
cbf864e601 Update executable_dot_zshrc 2021-09-01 12:16:59 -05:00
Thomas A. Christensen II
ebfe4fb981 Update executable_dot_bashrc 2021-09-01 12:16:17 -05:00
Thomas A. Christensen II
52ea6d75be Update dot_zshenv 2021-08-26 07:53:37 -05:00
Thomas A. Christensen II
412e05e9be Add dot_zshenv 2021-08-26 07:52:09 -05:00
Thomas A. Christensen II
d1013db98b Update dot_profile 2021-08-26 07:52:02 -05:00
Thomas A. Christensen II
e1f5ca6e92 Update dot_nextflow/config.tmpl 2021-08-25 16:14:53 -05:00
Thomas A. Christensen II
22e423f0e8 Update dot_envvar 
Update executable_dot_bashrc
 2021-08-25 15:31:11 -05:00
Thomas A. Christensen II
ab434bc04e Update executable_dot_zshrc 2021-08-25 11:15:41 -05:00
Thomas A. Christensen II
b727c5219c Add nextflow Github token 2021-08-25 11:11:38 -05:00
Thomas A. Christensen II
9b51c6a61a Move environment variables to their own file 2021-08-24 20:36:50 -05:00
Thomas A. Christensen II
9665a3f087 Remove screen-edge workaround 2021-08-24 20:27:25 -05:00
Thomas A. Christensen II
87cf0d8e81 Add shell-specific hooks to bash 2021-08-24 20:25:16 -05:00
Thomas A. Christensen II
07b403882c Fix path relocation 2021-08-24 20:20:03 -05:00
Thomas A. Christensen II
e81ad22fee Move local path to profile 2021-08-24 20:18:31 -05:00
Thomas A. Christensen II
fa30464c6f Move linuxbrew to profile 2021-08-24 20:16:48 -05:00
Thomas A. Christensen II
3220e8c380 Move hooks to their own file 2021-08-24 20:00:29 -05:00
Thomas A. Christensen II
6681bd24ff Recategorize config alias 2021-08-24 19:48:06 -05:00