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dotfiles/dot_envvar

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# Enable pipx completions
if [ $(command -v pipx) ]; then
eval "$(register-python-argcomplete pipx)"
fi
# Preferred editor for local and remote sessions
if [ $(command -v nano) ]; then
export EDITOR=nano
elif [ $(command -v emacs) ]; then
export EDITOR='emacs -nw'
elif [ $(command -v vim) ]; then
export EDITOR=vim
fi
if [ $(command -v kate) ]; then
export VISUAL=kate
elif [ $(command -v code) ]; then
export VISUAL=code
elif [ $(command -v emacs) ]; then
export VISUAL=emacs
fi
# Set a cool new pager with color support
if [[ $(command -v most) ]]; then
export PAGER=most
fi
# Replace cat with bat
if [[ $(command -v bat) ]]; then
export BAT_PAGER="less -RF"
export MANPAGER="sh -c 'col -bx | bat -l man -p'"
export MANROFFOPT="-c"
fi
# Add notification support for long-running processes
if [[ $(command -v ntfy) ]]; then
eval "$(ntfy shell-integration --longer-than 30)"
export AUTO_NTFY_DONE_IGNORE="vim nano emacs kate zshconfig screen tmux ssh top htop less more most nethogs 'singularity shell' julia man"
fi
# Set the Nextflow enviroment caches
export NXF_HOME="$HOME/.nextflow"
export NXF_CONDA_CACHEDIR="$NXF_HOME/conda"
export NXF_SINGULARITY_CACHEDIR="$NXF_HOME/singularity"
export NXF_CHARLIECLOUD_CACHEDIR="$NXF_HOME/charlie"