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dotfiles/dot_nextflow/config.tmpl
Thomas A. Christensen II 3d373a25b5
Remove whitespace changes from Nextflow config
Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
2021-12-30 12:46:02 -06:00

76 lines
1.6 KiB
Cheetah

tower {
enabled = true
accessToken = '{{ (bitwarden "item" "d41ac952-d8b5-4d20-a42a-ad8e0174d152").login.password }}'
}
{{ if (eq .cluster "scinet") }}
params {
{{ if (eq .chezmoi.hostname "ceres") }}
max_memory = 768.GB
max_cpus = 40
max_time = 1000.h
{{ end }}
{{ if (or (eq .chezmoi.hostname "Atlas-login-1") (eq .chezmoi.hostname "Atlas-login-2")) }}
max_memory = 1539.GB
max_cpus = 24
max_time = 14.d
{{ end }}
}
process {
scratch = true
executor = 'slurm'
clusterOptions = '--account=fabadru'
{{ if (or (eq .chezmoi.hostname "Atlas-login-1") (eq .chezmoi.hostname "Atlas-login-2")) }}
cpus = 12
memory = 192.GB
time = 7.d
withLabel: process_high_memory {
queue = 'bigmem'
memory = 1536.GB
}
withLabel: process_long {
time = 14.d
}
withLabel: process_medium {
cpus = 12
memory = 192.GB
time = 7.d
}
withLabel: process_high {
cpus = 24
memory = 384.GB
time = 14.d
}
{{ end }}
{{ if (eq .chezmoi.hostname "ceres") }}
queue = 'short'
cpus = 18
memory = 54.GB
time = 24.h
withLabel: process_high_memory {
queue = 'mem'
memory = 640.GB
}
withLabel: process_long {
queue = 'long'
time = 21.d
}
withLabel: process_medium {
queue = 'medium'
cpus = 36
time = 7.d
}
withLabel: process_high {
queue = 'long'
cpus = 36
time = 21.d
}
{{ end }}
withLabel: process_low {
cpus = 2
memory = 4.GB
time = 1.h
{{ if (eq .chezmoi.hostname "ceres") }}queue = 'short'{{ end }}
}
}
{{ end }}