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102 lines
2.6 KiB
Cheetah
102 lines
2.6 KiB
Cheetah
{{ if ne .machinetype "workstation" }}
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tower {
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enabled = true
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accessToken = '{{ (bitwarden "item" "d41ac952-d8b5-4d20-a42a-ad8e0174d152").login.password }}'
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}
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{{ end }}
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profiles {
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aahz {
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params {
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config_profile_description = 'KSU VDL Molecular NGS Big Server profile'
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config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>'
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config_profile_url = null
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max_memory = 745.GB
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max_cpus = 78
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max_time = 7.d
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}
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singularity {
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enabled = true
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autoMounts = true
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envWhitelist = 'NCBI_API_KEY'
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}
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process {
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executor = 'local'
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}
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}
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atlas {
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params {
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config_profile_description = 'Mississippi State University Atlas Cluster profile'
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config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>'
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config_profile_url = 'https://www.hpc.msstate.edu/computing/atlas/'
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max_memory = 1539.GB
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max_cpus = 24
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max_time = 14.d
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}
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singularity {
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enabled = true
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autoMounts = true
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envWhitelist = 'NCBI_API_KEY'
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}
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process {
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scratch = true
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executor = 'slurm'
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clusterOptions = '--account=fabadru'
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withLabel: process_high_memory {
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queue = 'bigmem'
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}
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}
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}
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ceres {
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params {
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config_profile_description = 'USDA ARS SCInet Ceres Cluster profile'
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config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>'
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config_profile_url = 'https://scinet.usda.gov/guide/ceres/#partitions-or-queues'
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max_memory = 768.GB
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max_cpus = 40
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max_time = 1000.h
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}
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singularity {
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enabled = true
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autoMounts = true
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envWhitelist = 'NCBI_API_KEY'
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}
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process {
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scratch = true
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executor = 'slurm'
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queue = 'short'
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withLabel: process_high_memory {
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queue = 'mem'
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}
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withLabel: process_long {
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queue = 'long'
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}
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withLabel: process_medium {
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queue = 'medium'
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}
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}
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}
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tananda {
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params {
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config_profile_description = 'KSU VDL Molecular NGS Desktop profile'
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config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>'
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config_profile_url = null
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max_memory = 14.GB
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max_cpus = 12
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max_time = 4.h
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}
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docker {
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enabled = true
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userEmulation = true
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envWhitelist = 'NCBI_API_KEY'
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}
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process {
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executor = 'local'
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}
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}
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}
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