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49 lines
1.3 KiB
Text
49 lines
1.3 KiB
Text
# Enable pipx completions
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if [ $(command -v pipx) ]; then
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eval "$(register-python-argcomplete pipx)"
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fi
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# Preferred editor for local and remote sessions
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if [ $(command -v nano) ]; then
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export EDITOR=nano
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elif [ $(command -v emacs) ]; then
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export EDITOR='emacs -nw'
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elif [ $(command -v vim) ]; then
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export EDITOR=vim
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fi
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if [ $(command -v kate) ]; then
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export VISUAL=kate
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elif [ $(command -v code) ]; then
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export VISUAL=code
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elif [ $(command -v emacs) ]; then
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export VISUAL=emacs
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fi
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# Set a cool new pager with color support
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if [ $(command -v most) ]; then
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export PAGER=most
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fi
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# Replace cat with bat
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if [ $(command -v bat) ]; then
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export BAT_PAGER="less -RF"
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export MANPAGER="sh -c 'col -bx | bat -l man -p'"
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export MANROFFOPT="-c"
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fi
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# Add notification support for long-running processes
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if [ $(command -v ntfy) ]; then
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eval "$(ntfy shell-integration --longer-than 30)"
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export AUTO_NTFY_DONE_IGNORE="vim nano emacs kate zshconfig screen tmux ssh top htop less more most nethogs 'singularity shell' julia man"
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fi
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# Set the Nextflow enviroment caches
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export NXF_HOME="$HOME/.nextflow"
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export NXF_CONDA_CACHEDIR="$NXF_HOME/conda"
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export NXF_SINGULARITY_CACHEDIR="$NXF_HOME/singularity"
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export NXF_CHARLIECLOUD_CACHEDIR="$NXF_HOME/charlie"
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# Give Julia full CPU access
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export JULIA_NUM_THREADS=$(nproc)
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