diff --git a/modules/viquas/main.nf b/modules/viquas/main.nf new file mode 100644 index 0000000..de9701a --- /dev/null +++ b/modules/viquas/main.nf @@ -0,0 +1,20 @@ +process VIQUAS { + tag "${prefix}" + label 'process_high' + + input: + tuple val(prefix), path(bam) + path(reference) + + output: + tuple val(prefix), path("*.fa") + + publishDir "results/viquas", mode: 'copy' + + script: + """ + viquas \\ + ${reference} \\ + ${bam} + """ +}