From 1e2048840988e94c4b261254d7d30247b58ac98b Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Wed, 9 Aug 2023 16:07:54 -0500
Subject: [PATCH] feat: Add ViQuas module

---
 modules/viquas/main.nf | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)
 create mode 100644 modules/viquas/main.nf

diff --git a/modules/viquas/main.nf b/modules/viquas/main.nf
new file mode 100644
index 0000000..de9701a
--- /dev/null
+++ b/modules/viquas/main.nf
@@ -0,0 +1,20 @@
+process VIQUAS {
+    tag "${prefix}"
+    label 'process_high'
+
+    input:
+    tuple val(prefix), path(bam)
+    path(reference)
+
+    output:
+    tuple val(prefix), path("*.fa")
+
+    publishDir "results/viquas", mode: 'copy'
+
+    script:
+    """
+    viquas \\
+        ${reference} \\
+        ${bam}
+    """
+}